cckb (LOC108274239)


Basic Information

Item Value
gene id cckb
gene name LOC108274239
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22614859 ~ 22621980 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947097.2
AGCTGGGTAGGCTTTATAAATGCTTCTCGCTTTTCTTCATGAGAACAACTGCTTTCACTCTCATAAGAGCAGCACGTGCTCCTCAACAAGACAAGgatgaactgtggtgtgtgtgtgtgcgtgcttctGGCCGCCTTCTCGGTCACCTTTGCGGCTCGCACCCGCTCCTCTCCCGCGCAGGATGAGAACGATGCTCTGCCCTCGCAGATGGACTCCAGTGTGAGCGCGGGACACGATGCCAACCCCCGCGCCAACCTCAACGAGCTGCTGGCCAGACTTATCTCCAGGAaagGTTCTGTTCGTCGGAACTCGATGGCGAACAGCAAGGCAAGCGCTTTGAGTGCTAACCACCGGATAAAAGACCGAGACTACCTGGGCTGGATGGACTTCGGTCGCCGGAGTGCCGAGGAATATGATTACTCCTCATGAGGGACCACGCCTCACCCCTCACTTTCCCaaataaagaatatatttattactattcGCCCTCTTCTTATaatgatgctgatgatgtatTTGATGTATATGTTTGTAAATTGATGATGCAATATACACTTATGCCAAA

Function

NR:

description
PREDICTED: cholecystokinin-like

GO: NA

KEGG:

id description
K05226 CCK; cholecystokinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947097.2 True 565 mRNA 0.51 3 22614859 22621980

Neighbor

gene id symbol gene type direction distance location
LOC113546929 NA coding upstream 65993 22537502 ~ 22548866 (+)
LOC117598775 NA coding upstream 945977 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 949115 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 951319 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 953820 21660425 ~ 21661039 (+)
rnf44 rnf44 coding downstream 111755 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 159386 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 519734 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 525217 23147197 ~ 23156708 (+)
LOC113546950 NA coding downstream 538483 23160463 ~ 23163243 (+)
LOC117598850 NA non-coding upstream 79083 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding upstream 113489 22500883 ~ 22501370 (+)
G215153 NA non-coding upstream 209335 22401950 ~ 22405524 (+)
G215149 NA non-coding upstream 271222 22340221 ~ 22343637 (+)
G215127 NA non-coding upstream 331866 22260891 ~ 22282993 (+)
G215294 NA non-coding downstream 102707 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 113791 22735771 ~ 22735986 (+)
G215343 NA non-coding downstream 156636 22778616 ~ 22779241 (+)
G215295 NA non-coding downstream 205041 22827021 ~ 22830832 (+)
G215350 NA non-coding downstream 219364 22841344 ~ 22909078 (+)
LOC113546930 LOC108275153 other upstream 123948 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 144181 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 217289 22397112 ~ 22397570 (+)
LOC117598922 LOC108275153 other upstream 224037 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 226710 22387697 ~ 22388149 (+)
higd2a higd2a other downstream 143834 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 158306 22780286 ~ 22780576 (+)
G215347 NA other downstream 213684 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 515266 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 1109474 23731454 ~ 23741390 (+)

Expression


Co-expression Network