gsg1l (gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975)


Basic Information

Item Value
gene id gsg1l
gene name gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23846609 ~ 23870799 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947119.2
gagagggggagggagagagagagagagagagagagagaatcagaaaTGTAGGGAGAGGGAAAggtgaagaaagaaagggacagataaagagagagagagagagagaggaatcaGAAATGTAGGGAGAGGGAAaggtgaagaaagaaagagagagagagagagagagagagagagagcacaccgTGCGCGCGGACAGAGCGGCCTCATATCTGCGCGCGCTCTTGCTGAACTCACATCTCCACGTTTCCATCTTCCTAGCGGAAAGTCGCGCGCGCTCCTCATGCCCTTGAAGCGCACCTTTCCGATCCCGTTAACCCTTTAACGCGTCGGTGAATGAGCTCGCGCGCGCGCTCTCTCCGTCTCCGGTCTCACCCGTCCCGCGCATGAGCCCCGCGCGCTTGATCTCTCGTGTGCCATGAAGACGAGCCGCCGGTGTCGCGCGCTGCTCTCCGTGGGCTTGAACCTGCTCGCGCTGCTGCTCTCGAGCACGGCGTTCGCCACGGCGTACTGGTGCCAGGGCACGCAGCGTGTCCCCAAGCCGAGCTGCAGCAAGGAGCGGCGCCACCACTGCATCGACTACGGAGCCAACGACACCGACCCGAGCAAAGTGCACTACAGCTGGGAGACCGGGGACGACCGCTTCCTGTTCCGCCGCTTCCACGCGGGCATCTGGTACTCGTGCGAGGAGAACATCCACGGCGGAGgtgagAAATGCAGGAGCTTTATTGATCTGGCTCCAGCGTCAGAGAGAGGTGTCCTTTGGCTGTCAGTGGTCTCCGAGGTGTTATACATCATGCTGCTGGTGGTTGGCTTCAGTCTAATGTGCTTGGAGCTCTTTCACTCCAGCAACGTGATCGATGGCTTGAAGCTGAATGCCTTCGCCGCCGTCTTCACGGTGCTGTCAGGACTTTTGGGGATGGTGGCTCACATGATGTACACCCAAGTATTCCAGATCACAGTCAGTCTGGGACCCGAAGACTGGAGACCACACACCTGGGACTACGGCTGGTCCTTCTGCATGGCATGGGGATCTTTCACCTGTTGCATGGCAGCCTCCGTCACCACGCTCAACTCCTACACGAAGACGGTCATCGAGTTCCGGCACAAGCGCAAGCTCTTCGAGCAGGGTCTCCGTGAGGAACAGGCCTTCCTCGACCAAGAGGCCTTCCACTACTTCCAGGATCGCTCTGTGCAGTCCATCTCCAGCTCGGTGGACCTGTACCCAGGCCACAGTAACGCCCATGGTAGTGCCTATAGCGGTGGCCGGGGGAAAATGCGTGCGCCTTCAGCTTCCGTGGACATGGCGGACAACGCAGATTCTCTGGGAGAGGAGCAATGCTGAGGACGGCTAACCGCAAAGACTTTTTTATGGTCTGAATATATTCCAACATGGAGTCGTTAGGATTGAGAACTCTCTAAGAGAGTCTAAGAACTCTCGGGAAGACAGCTATGATTTGTGATGGACCTATTTTTGGGGTGTGAACAAAAATGagtttatatttgattatataaacaaaggtgaaatattttgtgcatatgtgaaaaggaaagaaatgaaaattgtGCTAAAACTGTGATGAGAGATTGATTGTTGATTGTGAATTGAGAACAGGGACAGTTTCTGAACGTAGCCACGAAAGGTGCACTAACACTGCCAcacaaataacaacacattGGCTATCAACAGGGTGCCTGCGGGTTCTTAATTAAGTAGTccgaaattacattttacagattaaCAGCCTGAAGTACTAAACTGTAAAACTCAACtctatatttaataatgtttccTTATATGCAAGTTAGTTTGAGATAACTTTTGAGGACTTTCGGAGGCTGTTCTAAGGAtgccattttgttgttttttggaaCTTAGGTTTATGAAAACGTCTTGATGTTACCTGCAGACACCCTGTTACACTGAAATCTGAAGAATGGTTTTATAGCCACTGCCAGATATGCAAGTGTTGcattatctatctatatataaatatatatcgaATGTCCTCCATCGCTGAATATGCCTTTGTGTTGAAAACAGCAGATTAGCCGAGTGTTTACATTCGATCTCCAGAAAAGcacagtgtgcagtgtttgtCAGCCACAACAACCCAAGACTTGATAGTTTCACCATCTTGAATCCTTGATTAGATTAGCCTGTTCTTGATTTTGTGACTTTCATATGCATTACTGAATTGTTGAGCAATGGCGATCAGTGGCCAGgcctgtttatttaatttatttatttacttcaaataatttttttatgtataagtAATTGAATACATTCTTCTTTGAACgtattaaaatctatttatctatGTATGCATTACAACCATTTGATGAAAATGAGTTTCAGACTGA

Function

symbol description
gsg1l Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in midbrain hindbrain boundary. Orthologous to human GSG1L (GSG1 like).

NR:

description
PREDICTED: germ cell-specific gene 1-like protein isoform X1

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947119.2 True 2364 mRNA 0.49 5 23846609 23870799

Neighbor

gene id symbol gene type direction distance location
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 32974 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 55910 23784636 ~ 23790699 (+)
eef2kmt eef2kmt coding upstream 68603 23774380 ~ 23778006 (+)
noa1 noa1 coding upstream 73635 23767574 ~ 23772974 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding upstream 116497 23712519 ~ 23730112 (+)
mettl22 mettl22 coding downstream 494947 24365746 ~ 24383894 (+)
abat abat,LOC107690246,LOC107738621,LOC106592407 coding downstream 514938 24385737 ~ 24418546 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 698434 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 940281 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 996601 24867400 ~ 24896195 (+)
LOC117598845 NA non-coding upstream 95012 23748207 ~ 23751597 (+)
G215824 NA non-coding upstream 224000 23622372 ~ 23622609 (+)
LOC117599008 NA non-coding upstream 252961 23591868 ~ 23593648 (+)
G215685 NA non-coding upstream 457256 23388418 ~ 23389353 (+)
G215667 NA non-coding upstream 479814 23366281 ~ 23366795 (+)
LOC117598769 NA non-coding downstream 470889 24341688 ~ 24363384 (+)
G216174 NA non-coding downstream 552967 24423766 ~ 24444172 (+)
G216171 NA non-coding downstream 574274 24445073 ~ 24447468 (+)
G216185 NA non-coding downstream 588586 24459385 ~ 24462851 (+)
G216167 NA non-coding downstream 599260 24470059 ~ 24473172 (+)
igfbp7 igfbp7 other upstream 98478 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 105219 23731454 ~ 23741390 (+)
G215621 LOC108277208 other upstream 676056 23137246 ~ 23170553 (+)
G215347 NA other upstream 1010707 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 1066033 22780286 ~ 22780576 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 23448 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 168109 24038908 ~ 24330000 (+)
G216197 NA other downstream 586271 24457070 ~ 24458004 (+)
si:ch211-157c3.4 LOC108278842 other downstream 658880 24529679 ~ 24539117 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 926455 24797254 ~ 24797678 (+)

Expression


Co-expression Network