LOC113523801 (LOC108276446)


Basic Information

Item Value
gene id LOC113523801
gene name LOC108276446
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25931431 ~ 25938225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309670.1
AGCTCTGCATCGACACGAATCTGCTGAATCGGCGTTTTCACACTGTAAACAGAATTCCCAACTGATGAGTCACGACGCAGATGTTTTAAACTGAGCTTCATCACTTCCTCGACTTCACCCCTCACATTACAGTCTGCGTTTCTGAGTCTGTGTGTTGACATGAGTGTAAAATGAGCGTTACATGTGTCTCACCTccctctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaccaTAGCCGTGGTCATGGACCTCCTCACAGACCTGCTCATCCTGCAGGATCTTCTGGATGCAGCGAGTAAGCGTGGTGTTGCCGTGTACCTGCTGCTGGACGATAACGGTATTCCTCACTTCCTGGACATGTGCAACCGCCTGCAGATCTCTGCTCAACACCTCCgaAACATGCGTGTGAGGATGGTGAGAGGATGCGGTCTCGCTCTGTCCTTCGGAAAGCTGCCAGGATCATCGTGCTCCAAGTACATGCTGGTGGACGGAGAGAAAGTGATGTTCGGCTCGTACAGTTTCACCTGGACCTCGTCTCGGATGAACCGGAACACCATCACCGTCATGTCCGGTCAAGTGGTCGACTTCTTCGATAACGATTTCCGCGAGCTCTACGCCGTGTCCGACAAAGTGGACCTGTACCACGAGTTCCACATTCCCAAACCCCCCAAACACACGATCCCCACCCCGCTCCTGAAAGCTCCGCCCACTGCCACCCAGCCCGTTTTACCTGCATCCACCTCCCGCTTTCAGGTGTCTCTGGGAGAATCCAAACAGGTCAATCTGAAAGTTCCTGCTCACAAATATCACAATCCCAAATACGCCCTGGTGGTGGGAAACAGTTTAGGCCTCACGGGATCGCTGCAGGATCTGACCAGGCTCAGGGAAATCGCCAGAAACAGCTCGGAAAGCAACATGGAGAAGTTACTCCACACCAGTGGAGGCACTAAAGAGCCATCAGACAGAGCGTCCCAGGAGGAGACGAGTGAAAGTAAAGAAGATGTAAATAAATCGCCATTGTTCGGTTCAAAAAAGCAGCGCAGCTCCTTCAGGCTGTTCCTCAAAGGCAGGTCacccaatcagagtccagattTAAAGACAGAGAATCATAATCACAACACCTCAGACGTGAAAACAGCCAATCAAATCAAAGACTCACCTAAGCCTGCCAATCACGTCAAAGACTCACCTAAGCCTGCCAATCACGTCAAAGACTCACCTAAGCCTGCCAATCACGTCAAAGACTCATCCAAGCCTACCAATCAGATCAAAGACTCATCCAAGCCTACCAATCAGATCAAAGACTCACCAAAGCCTACCAATCAGATCAAAGACTCACCAAAGCTGGCCGGTCAGATCAAAGACACATCAAAACCTGCCAATCAAATCAAAGACTCACCAAAGCTGACCAATCACACGAAGGAGTCGCCGAAGACGGTTAATCACGTGAAGGAGGTGCAGCCTGAGAACTCGCAGATTCCCAACGGCAAACACACGCCACCCTCTCCGTTACGGGAAAAACCCGAGAGTGCGGTCATAGACGAGCTGGACGATTCGTTCGTGATCATAGAAAAACCAAATGTGAtgaagtttaaaaacaaaaaaccctccAGACTGCCGCAGAGAAGCGTGTCCATGCAGGTCATCAGCACAGGAGCCGAGGAAGGCTCCAAAGGACAAAAACGCAGCCAGAAGAAGTCGTGCATTCAGTCCTGAGATCAGTGGACatttaacacactcacagtagAAGACAGAAACATTACGCTGTGTAGAAATGGACAGAAATgcataataatgtaaatgtgatgtaatgtacagTGAGAAATTGTGAAATATGTCAGAGCAGAATTTTCTAGActgatgatatttttatttctgtgtaagACGAGATCAGTCGACTCATCTGAGACGACGCTTCACCTCTGAAATGTGAgatataaaaaatgtcaaaagtgTTTGAAGTGAATCGAGGAAGTCAGTGTCATTAGCGTGATGTTTAGGAGACGGTCATGTGACCATGTGAAGAACACGTCGCCTCTTTTCATCACCTAAAGGAGTGTGGAAATGAAAAAGCTTACAGTTTTAGTAGAAGTTgagaattgtgtgttttttgatgAGCTATGAAACTCcatgagacgtgtgtgtgtgtgagtgtgtgtgtggatgcacttgatttttttaagaatgtacatATGTTTAGTGACTGCAATACAAAGGGCCTTTAGAGCTTCAGTAAAGGTCATGCACTTGTGTTCCTGTGTTCTTTACCACACTTTAAATCCATTAAATCAAAATCTTGAAGCAGATAAATATTAAGACCTGAGAAGGAGTTCATATTTCAGTGCTGTTGTATTTACAGGTGTGTAGACGTTATCTGTCCTGACCTCAGTACGCGTCCTGTAGGTGCGCCTCGGTTTCAATCCCCACCTTTGTTTGACTACTGAATTGCCACTTAATGTctgcagctcacacacacacacacacacacacacacacgcaaatgaCCTACTTACACAAACTCTGAACTTTCCCTCATTAAATTGtcagaaatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309670.1 True 2567 mRNA 0.47 4 25931431 25938225

Neighbor

gene id symbol gene type direction distance location
LOC113523792 grap2 coding upstream 8575 25910682 ~ 25922856 (+)
LOC113523761 leg,LOC108276513 coding upstream 214292 25711195 ~ 25717139 (+)
LOC113523775 NA coding upstream 221327 25706864 ~ 25710104 (+)
LOC113523776 LOC108276501 coding upstream 226494 25696382 ~ 25704937 (+)
sgo1 LOC108258632 coding upstream 247819 25675922 ~ 25683612 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding downstream 18541 25956766 ~ 25972966 (+)
LOC113523768 LOC108276424,LOC108436653 coding downstream 48567 25986792 ~ 26007697 (+)
LOC113523788 LOC108276419 coding downstream 90073 26028298 ~ 26032262 (+)
gtpbp1 gtpbp1,LOC107737742,LOC107554141 coding downstream 149216 26087441 ~ 26118059 (+)
sgsm3 sgsm3,LOC107737740,LOC107695086 coding downstream 182809 26121034 ~ 26145128 (+)
G217082 NA non-coding upstream 29942 25900074 ~ 25901489 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding upstream 40984 25796304 ~ 25890447 (+)
G216817 NA non-coding upstream 535548 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 664321 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 700959 25230204 ~ 25230472 (+)
G217175 NA non-coding downstream 129523 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 141929 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 202352 26140577 ~ 26146174 (+)
G217193 NA non-coding downstream 261040 26199265 ~ 26205038 (+)
G217211 NA non-coding downstream 305484 26243709 ~ 26247946 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 1133753 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1392314 24529679 ~ 24539117 (+)
G216197 NA other upstream 1473427 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1601431 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 2011028 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 319146 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 367221 26305446 ~ 26306768 (+)

Expression


Co-expression Network