scaf1 (scaf1,LOC107658492,LOC107583012,LOC105925210)


Basic Information

Item Value
gene id scaf1
gene name scaf1,LOC107658492,LOC107583012,LOC105925210
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 423846 ~ 436894 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309706.1
CATAATTCCCTGCGGTTTTTCCCCTCACAGTGAGGGGAGTAAAATGGCGGATTAGGATGGGATGGGCCTCTTATTGTGTTcttaataggaaaaaaatgtttcgggttttaattttgtgttttagaGGTTACTGAAATAAGTTTTAATAGCTTTAAAGACCTCGCGGCTGTGAGGAAGCGCCTGCTGATAAAACTCTGCCCGGGGAAGtcccGGGATCGACGCTGCTCAGATGgagtggaagaagaagaggaggaccTTATGGCTGATAAAAGGACAATTGGTCTGAGCGGTTACCACGGAAACGGACAGACCATATGACGAGCCTGATTGGCCGCAGGCTGCTGTTTATCCAACACTACGTTGCTTATGTCTCAGCTGTGCTCTCAACGCTGGCTCACTGATCATCTCTTTGATGTCAAGCCTACGTCAGCGGTGAGAGTAAACGAGCCTTTGCTGCTGAAAGAAGAGCAGGCTACACATTTGACGGCGAGCTCCTTCCTGCATCCCTCAGGGTAGAGAAGTGGTTTATACACCGCTCCGTCGAACCGCGGCACAGATGCCCAGACCGTCTGCTCTCTGCACCTCTCAGAGGGCGGCTGAGACTGCTAAAAGCCCTCTCCCTTCTTCTCcctccacatctccatcctcaCCTTCATCTGCTCCTTCTTCCCCCTCCTCTCCCTGCTCAACCTCTCCCGGAAGAATGGGAACGGGATATCGCGAGGACGAGGACGGCGGCCATGCTGGGAACAACCGGGTCGGAAAAGCGGGAGGGGACGGCGTGTCGTCGACCTCATCATCCTTGGCGCCGTCTTTGCTCTCTGGACCTCCTTCGGCTTCTTTACGTCGTCTGTCCTCATCACCCCGTCTTTACGACGATGGCCAGAGGGAGGGCGTGGACATGGAGATATACGACCCCTTCCAACCCACAGAGGGCGAGGGCGTACCAGGCATAGCGGCCGGAGACGAAGGAGACAAGTACGACCCCTTTGAACCCACCGGATCACCGGCatcagagaaagagatggatggGGAGCAAGACGGAGAGGAAGAAAGCTCGATCAACAGCATACGAATAGCATGCGACACAAAGGACGCTAAAGAAGTGGAGCTGGAGACAGCTCCCGAGGCAGAGGGTCCACCTCCAGACTCGACAGAGACGGTAGAGCGACTGGACAGGATCAAACACACGAGACAGCGAGGAAAAGACCGAAGAGAAGAGGATGACTCGGAGCACTCAGAAATAGAAGAAGGAGAGATTGTGGGTGTCGCTGAGAGCAGAAGGGAAAGAGAGATTGAGATAAGAAGAGAGGTGCTGCTTCCCTCCTCGGGGAGTCCTTCATTCTTGCAGGGAGGAGCTCTCAAACCTGAGAGGATCTTGCGAGTTCTGGACGGCGAAGGATTCGTATCGGTTCGAGCGGAGGGTGAATGGGACCACCAGCCGGCGCCCCCTATTGGCATGGGAGACCTGAGAAGGAAACTCACCAACAGGCGAAAACAGAGATTCAGATCTTGCCCTTCTTCAGCATCCATATCGCCCCCTCCTGCATCCGTCCTACCCATACCATCTCCCTCCCCGCCGGCGTCCCAACCCCAGACCACGGAGAAGGTAAGGAGTCGCAGATCTTCTAAAAGCTCCAAGGAGAGGGACCGGCGCAAGCTGAAAAGCCAGGAAAAAGAGAAGCGAAAGAAGAGGAAAGATGAAAAGGGGGAATCGGAAAGAGCGAGTGGAGAGAACAAGGAGAGGGATCACGaaaggaggagcagaagagaagggaaagagaaggacagaaggagGAGCAGCAGAAGTTATAGCCAAACAAGGAAGAGCACGCATCAGAGCACTCCTGAGCCGGCGTCACACTCCCATAATACCTCTCGGCACACACACAGCCGCAGGTCCTGTTCCAGCCCCTCGGAAGGCCATCACAGAGGGAGGGACCGTGACCGGGATCGGGACAGAGACCGGGAAAGGGATCGATAccgagacaggaggagagataaccgggaaagagagagagataaagactccagaatgagagaaggaaggaagagagatcGGGATGAAGGAAGCAGGAAGTCTAGTAGCCGAGAGAGGGGAGATGcaaaaaggagaagagaaagcAGCGATAgaagagacagggagaaagaaCGAGGGCGGGAAAGAGAGCGGGACAGGAGAAGAGATGGTCGGCCTGTCGTACCTCCGTCTATTCAGGACCTGAACGGCTCGGACCTTTTCGCAATCAAACGCACCATCACTGTTACCACTACACCCACCACTACCTTGATCCCTACATCTCCTTCCCACACCCAGGATCGGGCCCGGAGTCCCGCACAAGGCTCAGACAAACCCCGCAAGCGCAAGAGGAAACGGAGGAGACGCTCCGATGATGAGGAGGAGCACAGGAGCAGATCTCGTCCCACCTCTTTAAGCCCTCTTCGATACCACGGCTTTGAATCGGACCGGCTCTCGGACCACCCCGAGCCAGACATGCTTTCTTTGGATGGAGAGGCGCTGGACTCGGATTACCCTTCACTGGAGGACTCCCCTCTGCTCCCTCCTCCCCCTGAGCCTCCTCTGCCAAGTCCCAAACTCAAATCCACGGCTCCCAAAAGTAGCCGGCACCATCAGAAGAAGAAATCCAGATCTAGGAGCAAAAAACTGGGCCAGTCTGAGTCGtccacttcctcctcttctcACAGACCCAAAGCGAGCAAAAGTAAAAGCCTTTTGCCCTCACTGTCCTCGCCTCTTTCTGCATCCTCTGGCAACACTGCTTCCCTTCCTCTCACTGCTTCTTCGTCCTCTGCCAAAAGAGTACGGAAGACCGGGAAAGATAAACCAAGCAAGAAGGAATCGGGTCGCTCAGGAAGATCCAAGAAGCTTGGTGGAAGCAGCAGGAAGGGTAAACTACAGTCTAAAGTCTCAGTGCTGGTCCGGGAGGGAGTAAGCAGCACCACGGGAAACTCTGGTAAACTGGGTATTGATCTCCTAGGACCCAGTGGAACGACGGGACCCTCAGTGGTGGGCGGGTCTATAGCTGTGGTTTTCCGTCGGGACAACGAAAGCCGGTCTCCATTCCTGAAGCCCTGCTCAGAACCACTTTCCTTGCCTGGCAGAGTCAAAGATTTGAACAAGACTGGCAAGCAGCGGAACACCCTTCCTTCCCTGTCCTCAACGAACCCGACGGGACTCAAGTCAAAGAAAGCCAAGCCAagctccaccacctccacaTCGTCATCCGCGTCCTCGCCCACATCATCCTCAGCAGCAAAGCGCAGACGAAGGCCAGGAAAGAAACCCCGGGAGAAGGGTCTCGCAGTTGACGGCCCCAACGCCAAAAGTGCCAACAGCAGCGCTTTAGGATCTGGTTGGACTGGAGCTTCAGATATTCAGCCTTTGAGCGGAATTGGTCCTAAACCATCAAGTCCGCCCTCCACACATCCTGGGCCCacaccttcatcttcatcttcatcatcgtcTTCTTCCTCATCTACCAGTGTTCTTCCCCCATCTTCCTCGCCCCCTCACACTCCTCCGTTGTCTTTACCGCCTTCTCGAGACACTAGAGAATCTTCTCCAGACTCTCAGACTGTAGACAGCAGCTGCAAGACCCCTGAACCTTCTTTCCTTTCAGAAGAGTGCCCTGCTCAGTCCCAAGCCACCCTGCTTGTGCCTGCAAAGTCACCGCCTAGCCCACCACCCTCAAGAGGAGATGGAATTTCACAGTCTGTCTCCAAGCTTCTCCCACTGGATGACCAGAAGACGTCACCACCCTGCTCCACTTCTTCGTCAACGTTGGCCGCAACTTCTCTCGCTCATTCCATTCCTCCTCTGGCTGCCGAACCTTCCTCGTCCTCCTCAGCCTCAGTGTCTTCATCAACAGTCAGTAAGCCTCCGCCCCCACCGCCCCCACCTTCTGCCGTGCCACCTTTGCCCTGGAGCCTTCAGACAGGCGTAGACTGCACTGCTGGAGGCGTACTAGCACTGACTGCGCTCCTGTTTAAGATGGAGGAAGCCAACATCGCCAGTCGAGCCAAAGCGCAGGAGTTCATTCAGGCCACAAGCCAGaTTCTCTCTCAGGCCAACCAGAACCAGGCGCAGTCGCATTCTACATCTTCATCCTCCGCCTCGCaagttcctcctcctcctccgtcaCATGCCCCGCCCCCGGGCCCAACTCCCACCCAGTTCATTCTCCATGGCTCCCTCCCATTGGTCGGCTGCACCAAAACCCCGCCTTCACACCTACACCCTGGACTTTCATTGGGTGGTGGATGTGCTCAGACTCCGCCTCCTCCGTTGCCCACAGGGCTGTCCGGGGCAGCAGGGGGCGCCAGTGAGACGGGCTGGGAGGTGGTAAAAGACCCTGAcaagTATTTGAAGAAGCTGCACACCCAGGAGAGGGCGGTAGAGGAAGTGAAGTTGGCCATTAAACCGTATTACCAGCGTAAAGACATCAACAAAGAAGAGTACAAGGACATCCTGAGGAAAGCTGTGCACAAGATCTGTCACAGCAGGACAGGTGAGATCAACCCGGTGAAGGTGAGTAACCTGGTCAAACTCTACGTGCAGAGGTACAAGTATTTCAGGAAGCACGGCCGCAAAATGGACGACGAGGACAAGGAAGAGCGAGACTCCGCCTCCCTGCACGGCTCCACGTGATTGGACGTCGGGACCGCTTTGTTCTGACGGACCCTTGGCGAGAGTTTGTGATTCTCCGCCGCTGTGCTACGTGCTCTTAATGTAAAGTCCTGAACTCCGCCTCCACACCATGCCACGCCCCTTTCCCTGTGTTTAATATAATGTGGGATTAAAGACGAGCGCACACTTCAGAGGGAGAGATAAAGAACACTTTTTTGTACTCTGTTAGGTTTGTCATGATTCAGAACACTACATGGatgtgctttctctctttctctgaatgAAGAATGTTCAAATATTCACCAGAAATAATTACAGACTCCTCCCTTTCGGTGATCAGAGGTAGACGAgtgcatgtttgatttttttttttttttttataacgcATTTGTTTTTGAATTGCGGTCCTTCACATGTATGATGTTCTTCGTAGCACAAAGTGATGGATGTGGAGAAAACGGACTCTCTCGGTGACTGTGCTTCGACGCCATCTCCTCATCTCAGACTCTACAGGCGCGTTAGCAGGTTCTCAGACTCGTGCTTGTAGACGTGCATGTGCTTTAGACTTTATTTGTACTTCAGGAGGACGATGTGATGAATCAGAGGTATGAAAGCGAAGCCGTCGCTCCATCACGAGCGCCGTGTCCTGCGTTTCGTCTCTGCACGACGCAGACGGCGTCTCACGAGCCGGGCTTCGGGACGGAACGATCAGCGGACGATAAACTCAACAAGAACAAGGAGACGGACTCGCTGCGGTGCCTGATGAAGCGGCGAGGAACCTTCTgtctgaaataaataatgtgttagTAGATCTTTACTGgcaatatataaacaaaaagtcAGCGCaacatctcaaaaaaaaaaaccacaaagaaCTTCTAGAACCTATAAAAGTCCCCAAAAAGGATGAATTGGGAAATGGTTCCACTTTTCCTACACCGTGTATAAAACTGCCGCGAATGTAGTTCATGTTAAATCTGAAACTTTAGCTGAGTTTTTGTTttacaataaatgtttattctaCATGAATGGGAGAGAAGTGGGGAGGAGGCAGCTGGGGGAGtgtgagaaaataaattattaaacctTTAACGAAAGGTGAATGACGAGTGGTTGTGTTACTGATAAagtatttgaaatgtttttgtttttttttgtaaaaattgcgtgtgaagtaaaaatgaaattgacgcaagtaaacaaaaaaacattcagagatTAGGGTAAAAACTGCAGATTTGATCAAACACAAGTCACTTTTATCATCAATCCTCACGTCCTGTCGTTTATCATTAATTCCACAAAACTGTCATGAACCTGCAGgaagtaataaatatatattttaattaaaaataaaggcagtttaaatgaaatgaattcagTTTGACGCTACACTAATAAAGGGCTCCTGAGGTTTT

Function

symbol description
scaf1 Predicted to enable RNA polymerase II C-terminal domain binding activity. Orthologous to human SCAF1 (SR-related CTD associated factor 1).

NR:

description
splicing factor, arginine/serine-rich 19 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309706.1 True 6066 mRNA 0.52 10 423846 436894

Neighbor

gene id symbol gene type direction distance location
LOC113525002 LOC108280599 coding upstream 2621 418751 ~ 421225 (+)
prr12b prr12,prr12b,LOC107729421,LOC107658420,LOC107730729,LOC107689691 coding upstream 19555 370566 ~ 404291 (+)
prrg2 NA coding upstream 54833 363377 ~ 369013 (+)
rras rras,LOC107658490,LOC107583016,LOC107729461,LOC107730736,LOC107554112,LOC107689668 coding upstream 66915 347722 ~ 356931 (+)
si:ch211-195b15.8 LOC108280354,LOC107579758 coding upstream 83688 337021 ~ 340158 (+)
trpm4a LOC108280300 coding downstream 20811 457705 ~ 481434 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding downstream 49360 486254 ~ 495569 (+)
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding downstream 59550 496444 ~ 507130 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding downstream 106506 543400 ~ 549365 (+)
LOC113524995 NA coding downstream 118395 555289 ~ 563409 (+)
G203108 NA non-coding upstream 116453 259191 ~ 307393 (+)
G203058 NA non-coding upstream 247855 175433 ~ 175991 (+)
G203049 NA non-coding upstream 264913 158552 ~ 158933 (+)
G203043 NA non-coding upstream 277129 144076 ~ 146717 (+)
G202983 NA non-coding upstream 381829 40638 ~ 42017 (+)
G203071 NA non-coding downstream 8580 445474 ~ 503897 (+)
G203134 NA non-coding downstream 73025 509919 ~ 512745 (+)
G203135 NA non-coding downstream 76695 513589 ~ 515888 (+)
G203141 NA non-coding downstream 94493 531387 ~ 531618 (+)
G203272 NA non-coding downstream 116827 553721 ~ 553946 (+)
LOC113525016 NA other upstream 55991 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 64492 266880 ~ 359354 (+)
G203077 NA other upstream 82570 199260 ~ 341276 (+)
G203081 NA other upstream 221041 201950 ~ 202805 (+)
G203047 NA other upstream 260710 156620 ~ 163136 (+)
LOC117598976 NA other downstream 86219 523113 ~ 529624 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 212550 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 229914 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 270844 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 289835 726729 ~ 732890 (+)

Expression


Co-expression Network