LOC113528610 (LOC108280679)


Basic Information

Item Value
gene id LOC113528610
gene name LOC108280679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1111509 ~ 1119731 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309709.1
TGTAGAGGTGGTCACCAGGGCAGAGCTTTCCAAAAGCGTCACATCACAAACattcactgcaaaaattgcCTTTAAATGTTTCTGTCTAGCTTTCAGACCTTACCATAAATATTCTAGATTCTGAAAACCTTGACGTTAATGCTACATAACAGGTCAAATTATCTTGCACTTAAATTTCAAGAACTAACGTGAGACCTGAAGGTTTTATGCATGCAGTGTGTATTGTTTTCACTGACGACTGTAGAGAGGATGAAAACTACCAGTGCATACTTGGGAAAGAACCACCATCAGGACCTCTGAGTGCACCAATAAACACACCTCCATGACAATGTCTCCTACACCAGCTCTCTTGTGGTGGTCAggtcttttttccctcttggtCCTCCTTCCTCTGATCCAGTCATGTGAAAAAGGAACGGCGCGAGACTGTGCCGAAGCAGACTTCGCTCCCGGGTCCGACCTCGCTGGAGAAGGCTTTGACATAACCAAGCTGCAGCGGAAAGGTTCTTTTGTCATCGACATGCAAAGATGGAAACAGAAGGACAAATCCTGTACTCTGTGCCATAACCCTTACATGGAGGGGAAGAAGCAGAAGCTCCCGGTTTCTGTGGTGGACTGGAGACCGAGCCAGAAGTGCAACATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGTCTGTGGTCAGCGCCAGCACCTCCTCTATCGAGAATAACTGGAACATGAATTTGGGAATTGATGTGAAGAGGGGAGAGGGGTCACTCATGTTGGCAGGCAGCAACTCCAAGTTGGCTGAGTATTCGATGGAGAAAACCAAAAAGGACAGGTTCAGTTTCACCAGTCACAGTATTTCCTGTGGATATTACAGTTACAGGGTTTCTAACAGGCCATTAATTCATCCTGAGTTTAAACAAGCCCTGAGCAAGCTACCCAAGCAGTACAATCCTCAGTTCAAGTCACGCTTCTACAAGCTCATAGACAACTTCGGCACTCACTACATCACCAAGGTGACCCTGGGAGGGAAGGTCCACTCGGTGACCAGTATCAGACAGTGCCAGACGTCCCTGCAGGGTCTGAGCGTGGACGAGGTGAAGACGTGTCTGGACGTGGAGGCGTCCGCCAGCGTGATGGGGAAATCGAAAACCGATGTTAACAGCAAGCACTGTGATGAAGCCAAGGCCAAGACTGAGAATAAAAACAGCTTCTCCAGTAACTTCAACGACCGATTAACAGAGATCTCAGGAGGCCACACCACAGAGCCCGAGCTCCTCTTCTCTGCAGATAAAGACCCCGGCGCTTATAAAGAGTGGCTCGCGTCCATCCCGCTCTACCCAGATGTGATTTCGTACTCTCTTCAGCCTCTCCATGAGCTTCTCCCCACCAACAACCCGACCCGAAAGCACCTGCGCAAAGCCATTCACGACTTCATCCTGGAGAAGTCTCTGTGGAGAAACTGCTCTGAGCCCTGTAGTGCCGGAATCAAACCCAATCCCAAAGAACCGTGTATGTGTTCATGCAGGAATAACCCTGGCGTGACCCCTGACTGCTGCCCATCCAAACGCGGCATCGCTCGGGCCAAGGTGATTGTACTACGGGCGTCAGGGTTATGGGGAGACCACACGACCGCCACGGACGGTTATGTCAAAGTTtatgaaaaaaacagcatgttgaTTGGACGCACGCCGGTGATCTACAACAACAACGATCCCCACTGGGCCATGACCTTTGATCTCGGTGATATCCCTCTGTCAAATTACGACCCTTTAAAGCTGGAGGTGTGGGACGAGGACAACAAATGGGATGACGACCAGCTAGGGGCCTGCAGTGTCCCACTGAAAGCGGGTGTTTCAGagaatttctgtaatttaaatcatgGCGtgctttattataaaatagagGTGGTGTGTGCACCGAGTTTAGGGGGTCCGTCGTGCACAGATTATGTTGGATCTCCTATGAATTTTAGTCTGGAGAAGGTATACGTGTCCCGGCACTCTCGGCCCATTCCACGGGACATGCTGCAGGAAATGGGCGTGATTCTTGACGAAGCTCCATTAACTGTTAAGCAGATCAGATACGATCCTAATAAAAGTGTCATGCAGCTTCTGTAGCCAAGTTCAGCACTTTCTTAAATccatttatgatatttatggtTTAAACAGTTATGCAGCAAACCCGACTGAATCCATGTACTCGTTAAATCAGTGTGCAAATCTGATTAAAAGTGTTATcgattaaataaggaataaaacacgacgaGGTGgtgtgaagttgattattttcctataacagcacatccccaagtgttttattcctcttgttcgacagcaatttgacaacaataacaaatttttatttattgaaaaaaacagACGTAGTTTTTTTTCGCTTTAATAATTTGTGGGATGGCCGCTAAACAAGtatttcctgttctcgcttatgttatagcagctataaacagtcattctctcaccagcctctctttttttctctcttgaagttaataagacaaaaaaaaacgcagcttgtcatattacctaGAAACCACAGagaagtgcaaactcctctgtcctgaagatgtcagaaaacttaaagttacagttaaaGTTTCAATATTTGTGAATCGTTGTTCAGTTTGATTACAATAAGGCTGttcacataaatatatttatattcatatgtaTCCATTGAATATTGTGGTGAGCATCAGCTTTTGAgtattatatatgtattcaGCTTTGCATGGATTTTTATTCCAGAGAAATAAAGACTTAATGAGCATTAA
>XM_034309710.1
ATAAACCGCTCAGAAGCAGTTTATTTCTCCGAACTAGGCACATATTCATCACAACCACATATAGGTTTTTCTACCACTTATCTGATGAAACAGTAATGAAGCCCACCCACTGGCATAGTCagaaattttacacacacacacacacacacacacacacaccgacagaTATCAACTCAGGAAAACTCAGGAAAGAACCACCATCAGGACCTCTGAGTGCACCAATAAACACACCTCCATGACAATGTCTCCTACACCAGCTCTCTTGTGGTGGTCAggtcttttttccctcttggtCCTCCTTCCTCTGATCCAGTCATGTGAAAAAGGAACGGCGCGAGACTGTGCCGAAGCAGACTTCGCTCCCGGGTCCGACCTCGCTGGAGAAGGCTTTGACATAACCAAGCTGCAGCGGAAAGGTTCTTTTGTCATCGACATGCAAAGATGGAAACAGAAGGACAAATCCTGTACTCTGTGCCATAACCCTTACATGGAGGGGAAGAAGCAGAAGCTCCCGGTTTCTGTGGTGGACTGGAGACCGAGCCAGAAGTGCAACATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGTCTGTGGTCAGCGCCAGCACCTCCTCTATCGAGAATAACTGGAACATGAATTTGGGAATTGATGTGAAGAGGGGAGAGGGGTCACTCATGTTGGCAGGCAGCAACTCCAAGTTGGCTGAGTATTCGATGGAGAAAACCAAAAAGGACAGGTTCAGTTTCACCAGTCACAGTATTTCCTGTGGATATTACAGTTACAGGGTTTCTAACAGGCCATTAATTCATCCTGAGTTTAAACAAGCCCTGAGCAAGCTACCCAAGCAGTACAATCCTCAGTTCAAGTCACGCTTCTACAAGCTCATAGACAACTTCGGCACTCACTACATCACCAAGGTGACCCTGGGAGGGAAGGTCCACTCGGTGACCAGTATCAGACAGTGCCAGACGTCCCTGCAGGGTCTGAGCGTGGACGAGGTGAAGACGTGTCTGGACGTGGAGGCGTCCGCCAGCGTGATGGGGAAATCGAAAACCGATGTTAACAGCAAGCACTGTGATGAAGCCAAGGCCAAGACTGAGAATAAAAACAGCTTCTCCAGTAACTTCAACGACCGATTAACAGAGATCTCAGGAGGCCACACCACAGAGCCCGAGCTCCTCTTCTCTGCAGATAAAGACCCCGGCGCTTATAAAGAGTGGCTCGCGTCCATCCCGCTCTACCCAGATGTGATTTCGTACTCTCTTCAGCCTCTCCATGAGCTTCTCCCCACCAACAACCCGACCCGAAAGCACCTGCGCAAAGCCATTCACGACTTCATCCTGGAGAAGTCTCTGTGGAGAAACTGCTCTGAGCCCTGTAGTGCCGGAATCAAACCCAATCCCAAAGAACCGTGTATGTGTTCATGCAGGAATAACCCTGGCGTGACCCCTGACTGCTGCCCATCCAAACGCGGCATCGCTCGGGCCAAGGTGATTGTACTACGGGCGTCAGGGTTATGGGGAGACCACACGACCGCCACGGACGGTTATGTCAAAGTTtatgaaaaaaacagcatgttgaTTGGACGCACGCCGGTGATCTACAACAACAACGATCCCCACTGGGCCATGACCTTTGATCTCGGTGATATCCCTCTGTCAAATTACGACCCTTTAAAGCTGGAGGTGTGGGACGAGGACAACAAATGGGATGACGACCAGCTAGGGGCCTGCAGTGTCCCACTGAAAGCGGGTGTTTCAGagaatttctgtaatttaaatcatgGCGtgctttattataaaatagagGTGGTGTGTGCACCGAGTTTAGGGGGTCCGTCGTGCACAGATTATGTTGGATCTCCTATGAATTTTAGTCTGGAGAAGGTATACGTGTCCCGGCACTCTCGGCCCATTCCACGGGACATGCTGCAGGAAATGGGCGTGATTCTTGACGAAGCTCCATTAACTGTTAAGCAGATCAGATACGATCCTAATAAAAGTGTCATGCAGCTTCTGTAGCCAAGTTCAGCACTTTCTTAAATccatttatgatatttatggtTTAAACAGTTATGCAGCAAACCCGACTGAATCCATGTACTCGTTAAATCAGTGTGCAAATCTGATTAAAAGTGTTATcgattaaataaggaataaaacacgacgaGGTGgtgtgaagttgattattttcctataacagcacatccccaagtgttttattcctcttgttcgacagcaatttgacaacaataacaaatttttatttattgaaaaaaacagACGTAGTTTTTTTTCGCTTTAATAATTTGTGGGATGGCCGCTAAACAAGtatttcctgttctcgcttatgttatagcagctataaacagtcattctctcaccagcctctctttttttctctcttgaagttaataagacaaaaaaaaacgcagcttgtcatattacctaGAAACCACAGagaagtgcaaactcctctgtcctgaagatgtcagaaaacttaaagttacagttaaaGTTTCAATATTTGTGAATCGTTGTTCAGTTTGATTACAATAAGGCTGttcacataaatatatttatattcatatgtaTCCATTGAATATTGTGGTGAGCATCAGCTTTTGAgtattatatatgtattcaGCTTTGCATGGATTTTTATTCCAGAGAAATAAAGACTTAATGAGCATTAA

Function

GO: NA

KEGG:

id description
K07818 PRF1; perforin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309709.1 True 2784 mRNA 0.45 5 1111509 1119731
XM_034309710.1 False 2697 mRNA 0.46 5 1111509 1119409

Neighbor

gene id symbol gene type direction distance location
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding downstream 49830 1056370 ~ 1061679 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 179603 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 466923 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 472302 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 480798 622345 ~ 630711 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 1435 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 24214 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 28864 1148595 ~ 1150039 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 56667 1176398 ~ 1178798 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding upstream 70725 1190456 ~ 1194184 (-)
G203609 NA non-coding downstream 197 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 67862 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 130494 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 154885 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 171166 939508 ~ 940343 (-)
G203630 NA non-coding upstream 118433 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 335456 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 379289 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 387470 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 405932 1525663 ~ 1528233 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 44689 947730 ~ 1066820 (-)
G203544 NA other downstream 200281 910117 ~ 911228 (-)
LOC117598979 NA other downstream 357687 750063 ~ 753822 (-)
G203488 NA other downstream 360710 741244 ~ 750799 (-)
LOC117598978 NA other downstream 361051 739668 ~ 750458 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 6953 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 145931 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 871442 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 946157 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 992714 2112445 ~ 2195540 (-)

Expression


Co-expression Network