LOC117598757 (LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734)


Basic Information

Item Value
gene id LOC117598757
gene name LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1121166 ~ 1126092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309712.1
aaaGGTTCTAAAGGGTTCATTTTGAAGCTCCATTTAAAGTGCACAGGGTTTATCTGCTCATAGACACATCAAGTACAGAAACAGGACACACCCCAAAACCAGCCATGCTGCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAATGTCACAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTTCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAACTGGCAGTCAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACCAAAAAAGACAAGTTCAGCTTCACCAGTCATGCTGTCTCTTGTGGATACTACAAATACAGGGTTTCGAGCCATCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTAAGACATATGATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCACTCTGTGACCAGCATCAGGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGCCAGTACGGGAATAGCTGCAAACCTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAGGAAAAGACTCTGAGCAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTTGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAACCCCTTCACCGGTTGCTGCCAGCAAAGAAATCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGGCGTGGCCCTCAACTGCTGCCCCACTCTGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGGATTTGTCAAGATCCTCCTCAATGGACAGATCCCCAGAGGCCAGACATCTGTGATCCCGGATAACGACTCACCCTACTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAATGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCATGCAGGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCGATTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAATTGTGTTCTTTGCGCAGCTATTGCATATTCACACCAGCTATCATAATGTTTAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTTCTGCTCATGTGTGCTGCCTATTGCCTTTTTAAAGCCTAATAAAAGTCTAATGAAGCAA
>XM_034309713.1
GAGCTCTTTTGTGCTTtcttgatgatggtggtgatattGAGAAGGTCAAAAGTGCATGATCAGTATTAGCAGGTGTGACACAAGTATCTCTTCCTGTGGCCTGAAACTCACTTGTGCtgtgttaattttaatttatcttAAAGGaggcagatttattttattacagatgctAAATGAACACCATGAAAAGTGTTTACAGAAACAGGACACACCCCAAAACCAGCCATGCTGCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAATGTCACAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTTCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAACTGGCAGTCAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACCAAAAAAGACAAGTTCAGCTTCACCAGTCATGCTGTCTCTTGTGGATACTACAAATACAGGGTTTCGAGCCATCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTAAGACATATGATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCACTCTGTGACCAGCATCAGGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGCCAGTACGGGAATAGCTGCAAACCTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAGGAAAAGACTCTGAGCAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTTGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAACCCCTTCACCGGTTGCTGCCAGCAAAGAAATCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGGCGTGGCCCTCAACTGCTGCCCCACTCTGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGGATTTGTCAAGATCCTCCTCAATGGACAGATCCCCAGAGGCCAGACATCTGTGATCCCGGATAACGACTCACCCTACTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAATGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCATGCAGGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCGATTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAATTGTGTTCTTTGCGCAGCTATTGCATATTCACACCAGCTATCATAATGTTTAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTTCTGCTCATGTGTGCTGCCTATTGCCTTTTTAAAGCCTAATAAAAGTCTAATGAAGCAA
>XM_034309714.1
TGCTCATAGACACATCAAGAAACAGGACACACCCCAAAACCAGCCATGCTGCAGACACTTCTGATTTGGGCCATCGTTGCCAATTTGCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAATGTCACAATGTGGACTTCGCTCCAGGATCCAACCTAGCAGGAGAAGGCTTTGACATCACCACCATGCAACGGAAAGGGGCCTTTGTCATTGATATGAGCTCCTGGATCCAGAACAACTTCTGCACTCTGTGTAAAAACCCCTACATGGGAGGTCAAGTGCAGAAGCTCCCAGTTTCTGTGGTGGACTGGAGACCAAGTCGGAAGTGCAAAATGAAGGTGTCCAGCTCTGTCTACCAGTCCAGCGAGGCCCTGGTCAGCTCCAGCACCTCTTCTATTGAGAACAACTGGCAGTCAGACTTGCAAATAGTAACTCCAAAAGTTCAGGGATCACTGATGCTGGCAGGCAGTAACTCCAAGCTGGCCGAATATTCAATGCAGAAAACCAAAAAAGACAAGTTCAGCTTCACCAGTCATGCTGTCTCTTGTGGATACTACAAATACAGGGTTTCGAGCCATCCACTCCTGCACCCAGAGCTGATTAATGAATTCGGAAGTCTCCCTAAGACATATGATGAGTCTACAAAGCACCTCTATTTCAGGCTGATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCACTCTGTGACCAGCATCAGGGAGTGCCAGGCGTCCCTGCAGGGTCTGAGTGTGGATGAGGTGAAGATGTGTCTGGACGTGGAGGCTTCTGCCAGTACGGGAATAGCTGCAAACCTGCAGACTGAGGCTCATCACTGCAAGCAGGCCAAGGAAAAGACTCTGAGCAAAAAGAGCTTCTCCAGCAGCTTCAGTGACAGGGAAACAGATGTGATTGGTGGCTACACTCAGAGTGTTGACCTCCTTTTCTTGTCAAAAAATGACCCAAAGGCCTATAAGGAGTGGGTCTCATCTCTGCCCGCTCACCCTGATGTGCTTTCCTACTCACTCGAACCCCTTCACCGGTTGCTGCCAGCAAAGAAATCAATCCGAGTGCATTTGCGCAATGCCATCAAGGACTACATCCTCCAGAGGGCTCTGTTAAAAAACTGCACAAGCTCATGTAAGACCGGTGTGAAGACCAACCCTGAGGAGCCGTGCAGCTGCAGCTGCCACAACAACCCAGGCGTGGCCCTCAACTGCTGCCCCACTCTGAGAGGATCTGCTCAAGTCACCGTAACTGCGATCAAAGCCACAGGTTTATATGGAGATTACTTCACTCAGACAGACGGATTTGTCAAGATCCTCCTCAATGGACAGATCCCCAGAGGCCAGACATCTGTGATCCCGGATAACGACTCACCCTACTGGGACTGGGATTTCCATCTTGGAACTATGGACATTACTCATTTCAGCAGCGTGAAGCTGGAGGTGTGGGACGAGGACAGTGATTCAGATGATGACCTTCTCGGGGCATGCAACGTTCCACTGAAATCTGGAGTGGAGAAGAATGCCTGTGCACTCAATCACGGAATGCTGTATTATAAAGTGCAGGTGAAGTGCATCCCTGGATTGACTGGTCCTTCATGCAGGGAGTACAATCCCTCTCCCATGGAGGCACAGCTAGAGAAACTGTACGTCTCCCGGAATGCTCGCCCGATTCCCAGAGGTATGCTGCTGGAGATGGGAGTGCTCCTCGATGAACGCATTCCCCGATTCAACCAGAGCAACATTCGCAAAGCTAAAGGTCTTGAATTGTAGACTAATTGTGTTCTTTGCGCAGCTATTGCATATTCACACCAGCTATCATAATGTTTAAGTAGAATAGGTGCACATAATATTGGCACATTATTACTAAACCTTTTCTGCTCATGTGTGCTGCCTATTGCCTTTTTAAAGCCTAATAAAAGTCTAATGAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309712.1 False 2030 mRNA 0.49 5 1121166 1126092
XM_034309713.1 True 2151 mRNA 0.48 5 1121166 1123850
XM_034309714.1 False 1971 mRNA 0.49 5 1121166 1126038

Neighbor

gene id symbol gene type direction distance location
LOC113528610 LOC108280679 coding downstream 1435 1111509 ~ 1119731 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding downstream 59487 1056370 ~ 1061679 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 189260 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 476580 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 481959 635684 ~ 639207 (-)
LOC113528091 LOC108280723 coding upstream 17853 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 22503 1148595 ~ 1150039 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 50306 1176398 ~ 1178798 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding upstream 64364 1190456 ~ 1194184 (-)
LOC113528094 LOC108280689,LOC108280734 coding upstream 76336 1202428 ~ 1205204 (-)
G203609 NA non-coding downstream 9854 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 77519 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 140151 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 164542 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 180823 939508 ~ 940343 (-)
G203630 NA non-coding upstream 112072 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 329095 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 372928 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 381109 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 399571 1525663 ~ 1528233 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 54346 947730 ~ 1066820 (-)
G203544 NA other downstream 209938 910117 ~ 911228 (-)
LOC117598979 NA other downstream 367344 750063 ~ 753822 (-)
G203488 NA other downstream 370367 741244 ~ 750799 (-)
LOC117598978 NA other downstream 370708 739668 ~ 750458 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 592 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 139570 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 865081 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 939796 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 986353 2112445 ~ 2195540 (-)

Expression


Co-expression Network