arl6ip1 (arl6ip1,LOC107658451,LOC107674170,LOC107732869)


Basic Information

Item Value
gene id arl6ip1
gene name arl6ip1,LOC107658451,LOC107674170,LOC107732869
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1000089 ~ 1014745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309756.1
CCGTTAACGGTTGGCTGccagagcagcagcagcggcagcAAGAGCGCGAGCGCACGAGAGCTTCACTTCCGACTCGGAGAGCTCGCAGTAAAGCAGAAGCGCAGCGGAATCATGGCGGAGGGCGATAATAAAAGCGCTAATTTATTGGCTCAGGAGACGTCTCAGCTGGAGGAGCAGCTGCAGGGATGGGGCGAGGTCATCTTAGCTGGGGATCAGTTCCTGCGCTGGGAGAAGCCCTGGTTCCCCGCCGCGCTGGTGGGCAGCACCACCGCGCTCTTCCTACTCATCTACTACCTGGACCCGTCCGTGCTGACCGGACTGTCCTGCACCGTCATGGTTCTGTGTCTGGCTGATTACCTCGTGCCCACGCTCGCCCCGCGCATCTTCGGCTCCAACAAATGgaccACGGAGCAGCAGCAGCGCTTCCATCAGATCTGTGGGAACCTGGTGAAGACGCAGCGGCGTGTGCTCGGCTGGTGGAAACGCCTGTTTGCCCTCAAGGAGGAGAAACCCAAGATGTACTTCCTGTCGGTGATCAGCACTCTGGTGATCGTGGCCTGGATCGGACAGCAGGTCCATAACCTCGTCCTGACCTACCTGATCGtgaacttcctcctgctgctgccCGGCCTGAACCAGCACGGCATCATCACCAAGTACGCCGGCATGGTGAAGCGGGAGGTCAACAAACTGCTCAagcagaaggagaagaagaacgagtgaaaagaaaagtgatgatgatgagaatgttgatgatgatgagaatTGAGTAGGAGTAATGAAAGTTCAATTTGCACCCCCAAGTAGCATTTAAACAGTAACTCAGACCACTAAAGTACTTCAggcaatgcaaaataaatatataaatataatgaaatataagtTAGGTTTAGGCTTAAACACGAGCGCATTGATTTCTCCCCCATTTCACCCTGAATATATCGATCACATCTATATGTTTATGGTGTAAAAGTGCTTAAAACCCGTACGCCGCTTTAAAGCCGTTATCTTTTTATAGAGCGTTAAAGCTAAGCATACAACTGAAACATAGATGTAGTTGTTTTTGAAAGCTAGATGGCTTGAGAAAGTGAGCAGAAATCGCACTGGGgagtgtttttggtttttttcttgtttgtttgtttctttgttggtttgtttcttgtgtttttggtttttgtttgtattttttttttttttgaaaactgcACTGAAACCACCCCAGGAGAAACTGGAGCGTTGTGAAGCTGTGCGTCGGTGCCCCGAGACCTCACGCCTGCCCGAGGGCTGCGGAGTCGTActgctgtgtttctctctctctctctctctctccctccttcatGCCTGCCCGAGGGTCACCGCTGTAAATACATACGTGTCCTCTTTCCATCTCCGTGTCTGTGTCTTACGTCCATGTACACGTGTGTGAACTTTCCCTCCGGCTTATCGGGAAGCCGTGACGTGTCTGTCTGCATTTCAGCCTCTCTTTTCAGTTcaatacattaattaaaaaaataataagaagaataataataaagaactgCTCTGATACTTTGA

Function

symbol description
arl6ip1 Acts upstream of or within neural crest cell migration and retina morphogenesis in camera-type eye. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Predicted to be integral component of membrane. Is expressed in several structures, including blastodisc; central nervous system; hypochord; optic cup; and retina. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 61. Orthologous to human ARL6IP1 (ADP ribosylation factor like GTPase 6 interacting protein 1).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 6-interacting protein 1

GO: NA

KEGG:

id description
K24864 ARL6IP1; ADP-ribosylation factor-like protein 6-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309756.1 True 1554 mRNA 0.49 6 1000089 1014745

Neighbor

gene id symbol gene type direction distance location
smg1 smg1,LOC107729485 coding upstream 2404 941020 ~ 997685 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding upstream 88179 889261 ~ 911910 (+)
LOC113527857 itpripl2 coding upstream 117447 865213 ~ 882642 (+)
hsd3b7 hsd3b7 coding upstream 150209 812026 ~ 849880 (+)
kat8 kat8,LOC107658503,LOC107554120,LOC107582998 coding upstream 273804 717617 ~ 726285 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding downstream 7181 1021926 ~ 1034215 (+)
LOC113528077 NA coding downstream 22406 1037151 ~ 1042450 (+)
LOC113528076 NA coding downstream 63694 1078439 ~ 1110138 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding downstream 238782 1253527 ~ 1266121 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding downstream 309355 1324100 ~ 1345037 (+)
G203357 NA non-coding upstream 115723 817391 ~ 884366 (+)
G203339 NA non-coding upstream 256349 741832 ~ 743740 (+)
G203321 NA non-coding upstream 261362 738339 ~ 738727 (+)
G203328 NA non-coding upstream 313459 679778 ~ 686630 (+)
G203303 NA non-coding upstream 368507 631290 ~ 631582 (+)
G203327 NA non-coding downstream 43934 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 46445 1061190 ~ 1078426 (+)
G203385 NA non-coding downstream 95784 1110529 ~ 1110847 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 294652 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 347638 1362383 ~ 1441015 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 193744 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 225839 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 267199 726729 ~ 732890 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other upstream 276397 666808 ~ 723692 (+)
armc5 armc5 other downstream 19591 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 205749 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 338584 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 546779 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 868307 1883052 ~ 1889515 (+)

Expression


Co-expression Network