LOC113525779


Basic Information

Item Value
gene id LOC113525779
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1282400 ~ 1294239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309758.1
agagagagatagacgcTTCCTTTTACCTCCAGCTCAAAGACACCTCTCCCtgtcttcttccttttctccttctGTCCTCTTCGTCAGGAACCGTACCCAGAACCGGATCTGAACCTCTGTCCCACCTCCAGCTGCAGgaTGGAATGTAAACGAAtacaggttgtgtgtgtgggtttgggaATTCTGGGCCTCATTGCTGCCATCATCACCTGCGCCCTCCCCAGCTGGACGGTTTCCTCCTTCACCAGACACTACATTGTCACAGCAatgATATCGCATGAAGGTCTGTGGATGGGGTGTGTGTACCAGAGCACGGGCCAGTATCAGTGTAGAGCCTACGATTCACTGCTGATCCTGGCCTTGGACATCCAGGCAGCTCGTGCCATGACCATCGTGTGCTGCATAGTGACGGTGATCTCCCTGCTGCTCGTCATGTGCATCAAAAATGAATACACCAAGCCAAAGATCTTCCTGGCGGCTGGTGTGGGCATGCTCATAGCCGGCGTGCTGCTCATCATCCCTGTCAGCTGGACAGCCAACAACGTCATGAGAGACTCCAAAAACCCGCTGGTATCAAGCCACAGAGAGATCGGACTGTGCATCTATATTGGCTGGGCCGGAGGAGTGCTCCTCCTGCTGGGCGGAGGACTGCTGTGCTGCTTCAGCCGCCCGCGATCCGGAGGCACCACCAAGTACTACAGCGACAACACCTCAACTCTGGTTATCTATGTAAATGACATCTGAAATAGTGAACATTTCAGGTAGAGGTTTGACGATGTGTTGGTATAAAAGCATAATAAGAAAAAGGGGCGGGGCATTTCAGAATGGGGATTCAACTAAATGTAGCAAATACTCCAATTAGGCAGGTTTATCAATATAACACAGTTAtaaaaatttctaaaatataaatatgtaaaatagtaACCACTCTTAATATTACCATTAATACTAAGCTATCAAAAATATTCCTTTTGTTCAAAATTGTTCAACCtgctacattattattatttttttttttcctctctttattgacttttcttatttttgaccCATTAACAAAAGAACACATGAACAGGTACACCTGCACTCAACCTTCTATACATACagtttacataaattaaatactacaataacaaattataataaaaaaaaaaataataataataaataaaataaataaataaataaataaaaaaagtacaataataaataataagtacatAATAAATCAATAGATGTATTTTCAACGTTTACAATGCCAAGTAAACATCAGTATAATGTTAAGTAAAGTCTATATCCCCACTTACATGATATTCATGTATGGTTCCCAAAGCCGATCAAAATCTTTTCGCTTGCCCTTTGCAATATAAGTTAGTCTCTCCAGTCCGATACAGTTCAAGATCtcctttttccacattttcaagGATGGAGCGTCCATGCTCTTCCAACACAATGCAATAGCTCTCCTGGCTTGGAGAAGACCGAAATCTAGGAGCTTAGTTTGTTTCAAAGTAAAATCCAATGGATATATTCCAAGAATACAGAGTTTAACATTCAAAGGAATTTGGACATTGAATATGTCTGACATACATGTAATAACCTCTTTCCAAAATTGTTTTACTTTTGAACATTCCCAAAGGCAATGGTATAATGTGCCCTTCTCATCCAAACATTTAGAGCACACATCTGGGATGTTACCAGACATATGGTGAAGCTTAACAGGAGTTATGTAGGTTCTCATTAACCATTTATATTGAAGTAATTTAAaccttgtatttattgtttgtgtttgtgcttttaGACATGCATCTTTCCAGTCTGCTTCATCTATATCTTCATTCATATCCAATTTCCAAGCATTTAATTTATCTAATGTTGACTCAGTACTATATTTAACCAATAAATTGTAATACCTAGATATATGCCCCCTTCCTTCTAAATTTCCGAGAGTTGTTTCCTCTAGTTATGATAAAGATGGTATACAACTTATCTGTTCCTTTTTTGATgacaaaaaactttttaactgtaaatatttaaaaaaatgttttttggggATTAAATATTTCTGGCATAAATGATCAAAGGGAAGTAAAACTCCATCTTCATATAAATCCA

Function

GO:

id name namespace
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309758.1 True 2115 mRNA 0.38 3 1282400 1294239

Neighbor

gene id symbol gene type direction distance location
LOC113528234 NA coding downstream 2848 1268382 ~ 1279552 (-)
LOC113528093 LOC108280723 coding downstream 65834 1208175 ~ 1216566 (-)
LOC113528094 LOC108280689,LOC108280734 coding downstream 77196 1202428 ~ 1205204 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding downstream 88216 1190456 ~ 1194184 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding downstream 103602 1176398 ~ 1178798 (-)
LOC113528189 NA coding upstream 8162 1302401 ~ 1306363 (-)
LOC113527946 LOC108280870,LOC103034911 coding upstream 15649 1309888 ~ 1316175 (-)
LOC113528660 NA coding upstream 205022 1499261 ~ 1499350 (-)
LOC113528659 NA coding upstream 205276 1499515 ~ 1499605 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding upstream 473067 1767306 ~ 1812044 (-)
G203630 NA non-coding downstream 41211 1238164 ~ 1241189 (-)
G203609 NA non-coding downstream 171088 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 238753 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 301385 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 325776 954684 ~ 956624 (-)
G203739 NA non-coding upstream 160948 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 204781 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 212962 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 231424 1525663 ~ 1528233 (-)
LOC117598750 NA non-coding upstream 423774 1718013 ~ 1718791 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 151850 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 215580 947730 ~ 1066820 (-)
G203544 NA other downstream 371172 910117 ~ 911228 (-)
LOC117598979 NA other downstream 528578 750063 ~ 753822 (-)
G203488 NA other downstream 531601 741244 ~ 750799 (-)
LOC113527889 LOC108278777 other upstream 696934 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 771649 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 818206 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1037437 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 1138910 2433149 ~ 2538111 (-)

Expression


Co-expression Network