LOC113528234


Basic Information

Item Value
gene id LOC113528234
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1268382 ~ 1279552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309759.1
agagagagagagagagagagagagagatagacgcTTCCTTTTACCTCCAGCTCAAAGACACCTCTCCCtgtcttcttccttttctccttctGTCCTCTTCGTCAGGAACCGTACCCAGAACCGGATCTGAACCTCTGTTCCCACCTCCAGCTGCAGgaTGGAATGTAAACGAAtacaggttgtgtgtgtgggtttgggaATTCTGGGCCTCATTGCTGCCATCATCACCTGCGCCCTCCCCAGCTGGAAGGTTTCCTTCACCAGAAAGAACATTGTAACgacacagATATCGCATGAAGGTCTgtggatggagtgtgtgtacCAGAGCACAGGCCAGTATCAGTGTAAAGCCTACGATTCACTGCTGATCCTGGCCTCGGACATCCAGGCGGCCCGTGCCATGACCATCGTGTGCTGCATAGTGTCGGCGATCTCCCTGCTGCTCGTCACGTGCATCAAAAAAGAAGTCACCAAGCTGAAGAGCTTCCTGCCAGCTGGTGTGGGCATGCTCATAGCCGGCGTGCTGCTCATCATCCCAGTCATCTGGACAGCCAACAACGTCATGAGCGACTCCAAAAAACCGTTTGTATCAAGCCACAGAGAGATTGGACTGTGCATCTATATTGGCTGGGCCGGAGGAGTGCTCCTCCTGCTGGGCGGAGGACTGCTGTGCTGCTTCAGCCGCCCACGATCCGGAGGCACCACCAAGTACTACAGCGACAACACCTCAACTCTGGTTATCTATGTAAATGACATCTGAAATAGTGAACATTTCAGGTAGAGGTTTGACGATGTGTTGGTATAAAAGCATAATAAGAAAAAGGGGCGGGGCATTTCAGAATGGGGATTCAACTAAATGTAGTAAATACTCCAATTAGGCAGGTTTATCAATATAACACAGTTAtaaaaatttctaaaatataaatatgtaaaatagtaACCAATGTTAATATTACCATTAATACTAAGGTatcaaaaatattcattttgttcAAAATTGTTCAACCTGCTACATtatctttactttttaaaaattgacacaacaaattaaaatgaaagaattaaaccaagataatcctaaactgtcattttttaatctgtaataGACACAAGGTGAATTTAACATACTAGCTCCACACctgatttaaatgatttatgtatAGGCAgggtttttgtatttatttcatagCTTTTAACTTTAGGATTTAGTCAGAGAAGAGCTTCTTAGACCCATGTAAgatatatgatgtatgattagCTGTGTATAATGTTGCTTTGTAAcaataaaatggttaaaaaaaataaatcaaaatgaacATTCCTGATTGTTTGATTATGtcacatttgttcatttggagTCTTTTGTCCAGCAATGAAGATAATGATGATGTTGGTgg
>XM_034309760.1
AGAGAGGGAGATtttattaggaTGGAATGTAAACGAAtacaggttgtgtgtgtgggtttgggaATTCTGGGCCTCATTGCTGCCATCATCACCTGCGCCCTCCCCAGCTGGAAGGTTTCCTTCACCAGAAAGAACATTGTAACgacacagATATCGCATGAAGGTCTgtggatggagtgtgtgtacCAGAGCACAGGCCAGTATCAGTGTAAAGCCTACGATTCACTGCTGATCCTGGCCTCGGACATCCAGGCGGCCCGTGCCATGACCATCGTGTGCTGCATAGTGTCGGCGATCTCCCTGCTGCTCGTCACGTGCATCAAAAAAGAAGTCACCAAGCTGAAGAGCTTCCTGCCAGCTGGTGTGGGCATGCTCATAGCCGGCGTGCTGCTCATCATCCCAGTCATCTGGACAGCCAACAACGTCATGAGCGACTCCAAAAAACCGTTTGTATCAAGCCACAGAGAGATTGGACTGTGCATCTATATTGGCTGGGCCGGAGGAGTGCTCCTCCTGCTGGGCGGAGGACTGCTGTGCTGCTTCAGCCGCCCACGATCCGGAGGCACCACCAAGTACTACAGCGACAACACCTCAACTCTGGTTATCTATGTAAATGACATCTGAAATAGTGAACATTTCAGGTAGAGGTTTGACGATGTGTTGGTATAAAAGCATAATAAGAAAAAGGGGCGGGGCATTTCAGAATGGGGATTCAACTAAATGTAGTAAATACTCCAATTAGGCAGGTTTATCAATATAACACAGTTAtaaaaatttctaaaatataaatatgtaaaatagtaACCAATGTTAATATTACCATTAATACTAAGGTatcaaaaatattcattttgttcAAAATTGTTCAACCTGCTACATtatctttactttttaaaaattgacacaacaaattaaaatgaaagaattaaaccaagataatcctaaactgtcattttttaatctgtaataGACACAAGGTGAATTTAACATACTAGCTCCACACctgatttaaatgatttatgtatAGGCAgggtttttgtatttatttcatagCTTTTAACTTTAGGATTTAGTCAGAGAAGAGCTTCTTAGACCCATGTAAgatatatgatgtatgattagCTGTGTATAATGTTGCTTTGTAAcaataaaatggttaaaaaaaataaatcaaaatgaacATTCCTGATTGTTTGATTATGtcacatttgttcatttggagTCTTTTGTCCAGCAATGAAGATAATGATGATGTTGGTgg

Function

GO:

id name namespace
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309759.1 True 1397 mRNA 0.42 3 1268382 1279552
XM_034309760.1 False 1261 mRNA 0.41 3 1268382 1276199

Neighbor

gene id symbol gene type direction distance location
LOC113528093 LOC108280723 coding downstream 51816 1208175 ~ 1216566 (-)
LOC113528094 LOC108280689,LOC108280734 coding downstream 63178 1202428 ~ 1205204 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding downstream 74198 1190456 ~ 1194184 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding downstream 89584 1176398 ~ 1178798 (-)
LOC117598761 NA coding downstream 118343 1148595 ~ 1150039 (-)
LOC113525779 NA coding upstream 2848 1282400 ~ 1294239 (-)
LOC113528189 NA coding upstream 22849 1302401 ~ 1306363 (-)
LOC113527946 LOC108280870,LOC103034911 coding upstream 30336 1309888 ~ 1316175 (-)
LOC113528660 NA coding upstream 219709 1499261 ~ 1499350 (-)
LOC113528659 NA coding upstream 219963 1499515 ~ 1499605 (-)
G203630 NA non-coding downstream 27193 1238164 ~ 1241189 (-)
G203609 NA non-coding downstream 157070 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 224735 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 287367 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 311758 954684 ~ 956624 (-)
G203739 NA non-coding upstream 175635 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 219468 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 227649 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 246111 1525663 ~ 1528233 (-)
LOC117598750 NA non-coding upstream 438461 1718013 ~ 1718791 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 137832 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 201562 947730 ~ 1066820 (-)
G203544 NA other downstream 357154 910117 ~ 911228 (-)
LOC117598979 NA other downstream 514560 750063 ~ 753822 (-)
G203488 NA other downstream 517583 741244 ~ 750799 (-)
LOC113527889 LOC108278777 other upstream 711621 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 786336 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 832893 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1052124 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 1153597 2433149 ~ 2538111 (-)

Expression


Co-expression Network