clec19a (clec19a,LOC107658453,LOC107583104)


Basic Information

Item Value
gene id clec19a
gene name clec19a,LOC107658453,LOC107583104
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 920007 ~ 931906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309761.1
tgtctctctctctctctctctctctctctctgagtagGAAGAGTCTGGCAGAGGATTTAGGAGTCTCGCCCACCCTCTGATCGATCCCAGTCTCCACACAGCCGTGttgtacgcacacacacacacacacacacacacacacacacacacacacacacacactcggccaCATTGCAGTGTGTGAAAATGCTCTGGTGTGGATTGTGCTTGGCCCTGTGGCTCAGCAGCGTGCCGCTTTGGGCTCTTCCCTCCACCAGCATGAAGATCACTCAGGCTCTGCCTCTGCAGCTTCCTGACTCGAGTCAGCCCGCCGTCTGTCCGCTCTTCTGGACCGAGTTCGATGGCTACTGCTACCGTTTCTTTCCCCTGAACCGCACGTGGGCCGAAGCCGACCTGTACTGCGCCGAGTTCTCTAACGGTCACCGGTCAGGAAAACTCGCCTCCATACACAGCTGGGAGGAGAACGTGTTCGTGTACGATCTGGTGAACAGCCGCGTGCCGGGAATCCCGACGGATATCTGGATCGGCCTGCACGACCGGAGACAGGAGGGCACCATGGAGTGGACGGACGGATCACCGTATGAGTATAACTACTGGGACGGAAACCAGCCGGACGATGGAATCCACCGTATCTCTGAGGAGGAGGACTGTGTGGAGGTCTGGTACAGACAGAACAGCGcaCTCAGGTCCTGGAATGACAACAGCTGTGACAAAGCTTTTCCTTTTGTGTGTAAAATCCCCATGCTGGAGCACTAACGTCCTGCACTGAGCTCATTACTGAGACAcggccctcacacacacacacgccacgcACAACACTGCTGCTGAGAGCAACGTCCATCTGGGCTTCATTTAAACTAGTGACTCATCTCatcacactcacagacacacacacacacacacacacagtggcttgcataagtattcacccccttgactGTTTCCCTGGTTGTGTAGTGTTATaatctggccctgaaattaatttaatcaaGATTTTTTCaagtcatgaatctacacaaaaaacCCATAATATTAAATCAGTATAAACTGTGAaacttatttacaaaaaaaaccaataaaatttgcACGACTgcacaagtattcacccctttaCTGTGAAACTCCTAAATTAGTTCTAGAGTAACCAGTTACCTCCAGAAGTCATATAATTAGTTAAATGGAGTCGACCTGTGTGCCGTTAAAGTGTCACATGCTCTGCTCTCAGTATAAATAAACCTGCTTCTGTTCCTGGAATGGAATCCAGAGTTTGTTAGGGAACATATCTAAACAAACGGCATCATGAAGAGCAAGGGGAgatcaaaacaagtctgggacaaagttctggaaaagtatcaatgaGGGTTTGGTTATGAAACTTGGAACATCTCACTTAAATCACACTTAAtcccttatttaaaaaaaaaaagttaagaatACAGCACAACTATGGCTCTTGGGATTAGTAAGAGCAGCAACCAATAG

Function

symbol description
clec19a Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart rudiment; heart tube; lens; and solid lens vesicle. Orthologous to human CLEC19A (C-type lectin domain containing 19A).

NR:

description
C-type lectin domain family 19 member A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309761.1 True 1482 mRNA 0.48 5 920007 931906

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 275421 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 280800 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 289296 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 305821 611190 ~ 614186 (-)
rcn3 rcn3 coding downstream 403057 507370 ~ 516950 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 124464 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 179603 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 189260 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 212039 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 216689 1148595 ~ 1150039 (-)
G203545 NA non-coding downstream 6446 911956 ~ 913561 (-)
G203543 NA non-coding downstream 16675 903037 ~ 903332 (-)
G203513 NA non-coding downstream 35595 817570 ~ 884412 (-)
G203510 hsd3b7 non-coding downstream 70142 791957 ~ 849865 (-)
G203502 NA non-coding downstream 114166 777344 ~ 805841 (-)
LOC117598764 NA non-coding upstream 7602 939508 ~ 940343 (-)
G203564 smg1 non-coding upstream 22778 954684 ~ 956624 (-)
G203577 smg1 non-coding upstream 48466 980372 ~ 981015 (-)
G203559 LOC108280785 non-coding upstream 109585 1041491 ~ 1043647 (-)
G203609 NA non-coding upstream 179181 1111087 ~ 1111312 (-)
G203544 NA other downstream 8779 910117 ~ 911228 (-)
LOC117598979 NA other downstream 166185 750063 ~ 753822 (-)
G203488 NA other downstream 169208 741244 ~ 750799 (-)
LOC117598978 NA other downstream 169549 739668 ~ 750458 (-)
G203254 NA other downstream 430276 486222 ~ 489731 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 15824 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 194778 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 333756 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1059267 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 1133982 2065888 ~ 2077477 (-)

Expression


Co-expression Network