elob (tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960)


Basic Information

Item Value
gene id elob
gene name tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1021926 ~ 1034215 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309762.1
TGTATGCTTACTGCGTTGTAGTGCGCGCGTAGAGGGATCAGGGGAGTAAGTTGGAACGGTGCTCGCGGCGTTTGTGATGtttgcggtgcattgtgggaaagaGGAAGACGAACAGCCGGCAGAGAAATGGACGTGTTCCTGATGATCCGACGTCACAAGACCACCATCTTCACGGACGCCAAGGAGTCGACCACGGTGTACGAGCTGAAGCGCATCGTCGAGGGGATCCTGAAGAGAGCGCCCGAGGACCAGAGACTGTACAAGgatgACATGTTGTTAGAAGACAGTAAGACGCTGGGAGACTGCGGATTCACAAACCAGACGGCGAGACCTCAGGCTCCGGCTACAGTGGGACTGGCCTTCCGCATCAGCGaCGATGCGTTCGAGCCGCTGCGTGTGGACGCGTTCTCCAGTCCCCCGGAGCTGCCGGACGTGATGAAGCCGCAGGACTCGGGCAGCACGGCCAACGAGCAGGCTGTGCAGTGAAACCCGCGGGGATCCGGGCGTGGCTGCGGGCGTGgctgtgggcgtgtgtgtgggagggggatcccgaggtgtgtgtgtgtgtgtgcttggatagggaagtgtgtgttgaggaatgagtgtgtgtgatggacgaGAAGAAGCGTGATTCTGtgtgatgctgaaaaaaaatgtttaattctaGCCGATCTGCGCTCTGaccttcacacactcagtgtgtt

Function

symbol description
tceb2 elongin-B

NR:

description
Transcription elongation factor B polypeptide 2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309762.1 True 704 mRNA 0.58 4 1021926 1034215

Neighbor

gene id symbol gene type direction distance location
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding upstream 7181 1000089 ~ 1014745 (+)
smg1 smg1,LOC107729485 coding upstream 24241 941020 ~ 997685 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding upstream 110016 889261 ~ 911910 (+)
LOC113527857 itpripl2 coding upstream 139284 865213 ~ 882642 (+)
hsd3b7 hsd3b7 coding upstream 172046 812026 ~ 849880 (+)
LOC113528077 NA coding downstream 2936 1037151 ~ 1042450 (+)
LOC113528076 NA coding downstream 44224 1078439 ~ 1110138 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding downstream 219312 1253527 ~ 1266121 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding downstream 289885 1324100 ~ 1345037 (+)
shank1 shank1,LOC108427331,LOC107732841 coding downstream 367593 1401808 ~ 1494018 (+)
G203357 NA non-coding upstream 137560 817391 ~ 884366 (+)
G203339 NA non-coding upstream 278186 741832 ~ 743740 (+)
G203321 NA non-coding upstream 283199 738339 ~ 738727 (+)
G203328 NA non-coding upstream 335296 679778 ~ 686630 (+)
G203303 NA non-coding upstream 390344 631290 ~ 631582 (+)
G203327 NA non-coding downstream 24464 1058679 ~ 1060521 (+)
LOC117598762 NA non-coding downstream 26975 1061190 ~ 1078426 (+)
G203385 NA non-coding downstream 76314 1110529 ~ 1110847 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 275182 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 328168 1362383 ~ 1441015 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 215581 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 247676 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 289036 726729 ~ 732890 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other upstream 298234 666808 ~ 723692 (+)
armc5 armc5 other downstream 121 1034336 ~ 1056334 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 186279 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 319114 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 527309 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 848837 1883052 ~ 1889515 (+)

Expression


Co-expression Network