LOC113528078 (cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449)


Basic Information

Item Value
gene id LOC113528078
gene name cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1056370 ~ 1061679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309764.1
CTCATTTCTTGGCAGACGGACAGACTGCACTGGGGAGGAGTCTGATATTCAGGAGCAGGACAGACTGAAGGACAAACACTCAGACGAGACACAGAACATACACCACCAGTCTAACAATAACGACCAGAAACCAGAAAAACATCCCATCATCTGATCTGATCATCTCTCACGACGaacgaAGGGAATGGCTGCGTCTGCGTCGTCTGCGGTGGCTCGCCGCGTCCTCGCCGCTGCATCGCACGGAGGCCACGAGGGAGGAGTTAAGACGTGGAGGATCCTGACGTTCGTGCTGGCGTTACCGGGCGTGGCCGTGTGCATGGCGAACGCTTACCTGAAGCAGCAGGCTCATTCCCACGAGCCGCCCAACTTCGTTCCATATCCTCACCTGCGCATTCGCACCAAGCCGTGGCCGTGGGGTGACGGAAACCACTCGCTGTTCCACAACCCTCACACCAACCCTCTGCCCACCGGCTACGAGGACTCGCACCACCACCACTGAGCGACAGCGCCACCCGGAGCCCGCGTGCAGAACGCCGCAACCTAAAACTACtacatcctttaaaaaaaaaaaaaaaa
>XM_034309765.1
TATAAACCTCATTTCTTGGCAGACGGACAGACTGCACTGGGGAGGAGTCTGATATTCAGGAGCAGGACAGACTGAAGGACAAACACTCAGACGAGACACAGAACATACACCACCAGTCTAACAATAACGACCAGAAACCAGAAAAACATCCCATCATCTGATCTGATCATCTCTCACGACGaacgagtgagtgaAGGGAATGGCTGCGTCTGCGTCGTCTGCGGTGGCTCGCCGCGTCCTCGCCGCTGCATCGCACGGAGGCCACGAGGGAGGAGTTAAGACGTGGAGGATCCTGACGTTCGTGCTGGCGTTACCGGGCGTGGCCGTGTGCATGGCGAACGCTTACCTGAAGCAGCAGGCTCATTCCCACGAGCCGCCCAACTTCGTTCCATATCCTCACCTGCGCATTCGCACCAAGCCGTGGCCGTGGGGTGACGGAAACCACTCGCTGTTCCACAACCCTCACACCAACCCTCTGCCCACCGGCTACGAGGACTCGCACCACCACCACTGAGCGACAGCGCCACCCGGAGCCCGCGTGCAGAACGCCGCAACCTAAAACTACtacatcctttaaaaaaaaaaaaaaaa
>XM_034309766.1
AATATAAACCTCATTTCTTGGCAGACGGACAGACTGCACTGGGGAGGAGTCTGATATTCAGGAGCAGGACAGACTGAAGGACAAACACTCAGACGAGACACAGAACATACACCACCAGTCTAACAATAACGACCAGAAACCAGAAAAACATCCCATCATCTGATCTGATCATCTCTCACGACGaacgagtgaAGGGAATGGCTGCGTCTGCGTCGTCTGCGGTGGCTCGCCGCGTCCTCGCCGCTGCATCGCACGGAGGCCACGAGGGAGGAGTTAAGACGTGGAGGATCCTGACGTTCGTGCTGGCGTTACCGGGCGTGGCCGTGTGCATGGCGAACGCTTACCTGAAGCAGCAGGCTCATTCCCACGAGCCGCCCAACTTCGTTCCATATCCTCACCTGCGCATTCGCACCAAGCCGTGGCCGTGGGGTGACGGAAACCACTCGCTGTTCCACAACCCTCACACCAACCCTCTGCCCACCGGCTACGAGGACTCGCACCACCACCACTGAGCGACAGCGCCACCCGGAGCCCGCGTGCAGAACGCCGCAACCTAAAACTACtacatcctttaaaaaaaaaaaaaaaa

Function

symbol description
cox6a2 Predicted to enable enzyme regulator activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in brain; gill; heart; liver; and skeletal muscle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D and cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX6A2 (cytochrome c oxidase subunit 6A2).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02266 COX6A; cytochrome c oxidase subunit 6a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309764.1 False 576 mRNA 0.57 4 1056370 1061670
XM_034309765.1 True 591 mRNA 0.56 4 1056370 1061677
XM_034309766.1 False 589 mRNA 0.56 4 1056370 1061679

Neighbor

gene id symbol gene type direction distance location
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 124464 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 411784 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 417163 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 425659 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 442184 611190 ~ 614186 (-)
LOC113528610 LOC108280679 coding upstream 49830 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 59487 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 82266 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 86916 1148595 ~ 1150039 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 114719 1176398 ~ 1178798 (-)
G203559 LOC108280785 non-coding downstream 12723 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 75355 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 99746 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 116027 939508 ~ 940343 (-)
G203545 NA non-coding downstream 142809 911956 ~ 913561 (-)
G203609 NA non-coding upstream 49408 1111087 ~ 1111312 (-)
G203630 NA non-coding upstream 176485 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 393508 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 437341 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 445522 1507201 ~ 1527141 (-)
G203544 NA other downstream 145142 910117 ~ 911228 (-)
LOC117598979 NA other downstream 302548 750063 ~ 753822 (-)
G203488 NA other downstream 305571 741244 ~ 750799 (-)
LOC117598978 NA other downstream 305912 739668 ~ 750458 (-)
G203254 NA other downstream 566639 486222 ~ 489731 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 65005 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 203983 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 929494 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 1004209 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 1050766 2112445 ~ 2195540 (-)

Expression


Co-expression Network