LOC117598761


Basic Information

Item Value
gene id LOC117598761
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1148595 ~ 1150039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309767.1
ATGCTTCAGACACTTCTGATTTGGGCTGTCTTTGCCAATTTTCTCCCTCCTCCAACCAGCCAGACCTGCTTCAAGGCCAATGAGTCTCAGTGTCGCCATGTGGACTTCGCTCCAGGATCCATCCTAGCAGGAGAAGGCTTTGACATCACCACCTTGCAACGGAAAGGGGCCTTCGCCCTCGACATGAGCTCCGGGCTCCAGAAGGACAAGTCCTGCACTCTGTGTAAAAACCCCTACATGAGAGGTCAAATGCAGAAGCTCCCAGTTTCTGTGGTGGATTGGAGACCAAGTAAGAAGTGCACCATCAAGTTGTCCAGCTCCGTCTACCAGTCCAGTGAGGCCCTGGTCAACGCCAGCACCTCCTCTATTGAGAACAACTGGCAGTCAGACTTGCAATTGATACCTCCAAAAGACCAGGAATCAATGTTACTGGCAGGCAGTAACTCCAAGCTGGCCAAATATTCAATGGAGAAAACCAAAGAAGACAAGTTCATCTTCACCAGGCATGCTGTCTCATGTGGATACTATGGATACAGCGTTTCGAGTCATCCACTCCTACACCCAGAGCTAAATAATGAATTCGAAAGTCTCCCTGAGACATATGATGAGTCTACAAAGCACCTCTATTACAAGCTTATTGACAAGTTTGGTACTCATTATATCACAAAGGTGACTCTGGGTGGAGAGGTTCACTCTGTGACCAGCATCAGGGAGTGCCAGGCGTCCCTGGAGGGTCTGAGTGTGGACGAGGTGAAGATGTACCTGGGACAGGTGATCCCAGGTAACGACTTGCCAAAATGGAACAGGGATTTCAATCTTGGAATTGTGGACCTTACTCTGTTCAGCAGTGTGAATCTGGAGGTGTGGGATAAAGACAGCGATTCAGATGATGACCTTCTTGGGAGGAGCACTGTTAAATTGAATTCTGGAGTTGAGGAAAATGTCTGTGCACTCTATTACGGAATGCTGTATTATAAAGTGCAGGTGACATGCAACCCTCATTTGACTGGTCCTTCGTGCTTGGAGTACAATCCCTCTCCCATGGAGGCACAGCTGGAGAAACTGTACATCTCCAGGAATGCTCACCTGATTCCCAGAGGTATGATGCTGGAGATGGGAGTGCTCCTCGATGAATGCATTCCCCGCTTCAACCAGAGCAATATTCGCAAAGCTAAAGGTCTTGAATTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309767.1 True 1191 mRNA 0.49 3 1148595 1150039

Neighbor

gene id symbol gene type direction distance location
LOC113528091 LOC108280723 coding downstream 438 1143945 ~ 1148157 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding downstream 22503 1121166 ~ 1126092 (-)
LOC113528610 LOC108280679 coding downstream 28864 1111509 ~ 1119731 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding downstream 86916 1056370 ~ 1061679 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 216689 920007 ~ 931906 (-)
LOC113528092 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734,LOC108280723 coding upstream 26359 1176398 ~ 1178798 (-)
LOC113528095 LOC108280700,LOC108280689,LOC108280715,LOC108280710,LOC108280723,LOC108280734 coding upstream 40417 1190456 ~ 1194184 (-)
LOC113528094 LOC108280689,LOC108280734 coding upstream 52389 1202428 ~ 1205204 (-)
LOC113528093 LOC108280723 coding upstream 58136 1208175 ~ 1216566 (-)
LOC113528234 NA coding upstream 118343 1268382 ~ 1279552 (-)
G203609 NA non-coding downstream 37283 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 104948 1041491 ~ 1043647 (-)
G203577 smg1 non-coding downstream 167580 980372 ~ 981015 (-)
G203564 smg1 non-coding downstream 191971 954684 ~ 956624 (-)
LOC117598764 NA non-coding downstream 208252 939508 ~ 940343 (-)
G203630 NA non-coding upstream 88125 1238164 ~ 1241189 (-)
G203739 NA non-coding upstream 305148 1455187 ~ 1457398 (-)
G203733 NA non-coding upstream 348981 1499020 ~ 1500815 (-)
G203756 NA non-coding upstream 357162 1507201 ~ 1527141 (-)
LOC117599001 NA non-coding upstream 375624 1525663 ~ 1528233 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 18045 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 81775 947730 ~ 1066820 (-)
G203544 NA other downstream 237367 910117 ~ 911228 (-)
LOC117598979 NA other downstream 394773 750063 ~ 753822 (-)
G203488 NA other downstream 397796 741244 ~ 750799 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 115623 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 841134 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 915849 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 962406 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 1181637 2331676 ~ 2344912 (-)

Expression


Co-expression Network