LOC117595691


Basic Information

Item Value
gene id LOC117595691
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16997366 ~ 16998694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309796.1
TAGCTGCTAACATTTTGCACGATCGACACGGGTGGCTGTCGGTTCGTTGTGCAGGCCACACCTTACAGCTGGTGGTCAACCATGCTCTGAAGCAAACACAGATCAGTAATGCACTTGGAGCAGCGAGGGCTCTTGTGGAGCACTTCAAAAAAAGTGAATTGGCTTCAACCAAGCTTAAGCTTAAGCAAAAACAGATGGGGACTCCAGACCACCGTCTCATCCAGGACGTCTCCACTAGATGGAATAGCACATATTACATGATCAACAGCAAGGTAAAAGGTACCTGAATCTTAAACCCGATCAGTGGACCCTCTTGGAACACCTTGCAAAAGCTCTTGAGCCACTTGAATGTGCCACTGTGTTCTTGAGCGGGGAAAGCTACGTGACAATCTCTACCCTCCCTCCTCTGTACAGAGGGCTATTGAAGTCCACCAGCATTGCCTATGATGTAGCGCCAGTGCAGGCTTTTCAGACTGCTGCCTCATTGGAGATGACTGAATACTGCTCTGATGTGGTCAGTGTCACAGATGATGATGATCCAAGCAAGCACATCATTGCAGCTGCACTAGACCCAAGGTTCCGGAAACTGAAATTCCTAACACCACAGGAGAAGTTCAGCGTGCAGAGTAAACTACAAGATCTAGCTCTACAGATTGCCTTTGAGAAGAACCAGCCCAGCACAGGGGAGTCCACACCATCAGATGATCTGCATTCAACATCCGGGCATGAATCAACTCTCGATTCACTTCTTGGATGCGATTCAGATGGtgatgagagtgagacagatcagCAGGCATCACATGAACAACTAGTCAGTAATGAAGTGCTGATGTACTTTGCTGAGCCACCAATCTTGAAGAAACAGTGTCCCCTGTCCTGGTGGAAGCTCAATGAGACCAAGTACCCCACAATGGCAATTTTAGCCAAGTCATTCTTATGCATTCCTGCTACCTCCACAGCATCGGAATGGCTATTCTCTGTAGCTGGGTATATTGTCTCTAAGAAGAGAGCTAGTCTTGACCCAGATCACGTGGACATGCTGACATTCATGCACTGCAATAAGCCATAAGTTTAAATCCTTTCCTACTTTTTGTTTACATATGGCCTTATTTGACCACTTTAAGTCACTTTAAGACACAACAATGTCACTTACCTCAGTTTTTCAATTTTCTTAATGTCCATGGCcagtttgtggtttctcaaGTTACTGGATGTTAACTCAGTGTTTACATTGTGTCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309796.1 True 1242 mRNA 0.46 2 16997366 16998694

Neighbor

gene id symbol gene type direction distance location
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 25599 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 178098 16808875 ~ 16819268 (+)
cfap70 cfap70 coding upstream 188716 16779776 ~ 16808650 (+)
LOC113527936 LOC108276743 coding upstream 447452 16545641 ~ 16549914 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding upstream 502664 16400754 ~ 16494702 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding downstream 68543 17067237 ~ 17085755 (+)
trap1 trap1 coding downstream 321048 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 750480 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 809578 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 1022391 18021085 ~ 18043102 (+)
G212446 NA non-coding upstream 69384 16869758 ~ 16927982 (+)
G212449 NA non-coding upstream 69997 16923805 ~ 16927369 (+)
G212445 LOC108276517 non-coding upstream 82793 16842948 ~ 16914573 (+)
G212441 NA non-coding upstream 186616 16810311 ~ 16810750 (+)
G212412 NA non-coding upstream 227238 16769928 ~ 16770128 (+)
G212541 NA non-coding downstream 53684 17052378 ~ 17055807 (+)
G212571 NA non-coding downstream 181100 17179794 ~ 17180253 (+)
LOC117598773 NA non-coding downstream 277960 17276654 ~ 17285842 (+)
G212582 NA non-coding downstream 285589 17284283 ~ 17284486 (+)
G212589 NA non-coding downstream 297714 17296408 ~ 17296874 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 851040 16140330 ~ 16146326 (+)
G211913 NA other upstream 1028607 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2005916 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2375578 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3503424 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 88590 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 699979 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1184999 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1411147 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1426485 18425179 ~ 18434528 (+)

Expression


Co-expression Network