LOC113528015


Basic Information

Item Value
gene id LOC113528015
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11023672 ~ 11025804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309798.1
TCTGTGttcttgtttaaaatatttggaCTCTACGTGCATTAGCATCATGCTTGCAAGGCTTGGGGTGTTCATCTTCGCTTTATCCTATGTTAAATGCCAGAAGGTTGTCACCCAGACACCTGTGTCACATACCGTGAATAAGGGAGACACGGCCACATTCATGTGCAATGTTGTAAGAGATGATGATGCAAGCGCTAACTGGTACAAGCAGATTCCCGGAGGAGTTCCCCAGTATGTCTTAAGACATTATAATTCCTGGAGCACTCCTAAATATGGATCTGGCTTCTCTTCACCCAAATTTACATCTACAAGCTCATCTAAAATTGATTAcaacctaataataaataatgtggaGGTGGAGGACTCTGCAGTGTATTACTGTCAGACATATGACAGCACTGCCAAAGAATATGTATTCGCCCAAGGAACAAAGTTGATTGTGACTGACCATGCTCTCCCAGCTCCTGTTCTGACAGTTTTCCCTCCATCCAGTAACGAGCTGAAGTCTAACAAAGTCACTGTAGCATGTGTAGCCAGTGACATGTCCAGCGGTTTTGCTGAAATGCACTGGCTCGTAGATGGGAGCGTAATCACCAGTGGAGTCATCACTGGATCTGCAGCTCAGCAACCAAATAAGAAATTCACCTCGAGCAGCTATCTGAGTATTGACAGCTGCGAGTGGGAAAAAGATAAGAGCATAACATGCAACGTGTCTTCTGGAGGAAAACAAGCATCAGTGGAAATTAACAAGTCTCAGTGTATTGAGTGAATCAGATACAATTTGTTTATCTTAATTCTCTGTCAAATTTAATAGAGATCTTAGATCTTGAAAATGTTGCTTTCCTGCCAAAGTAATGTTTGAGCTTTTTGTTTCAAATCACCAATATGgtacaattttaataaagtgcaaacattgaaaaataagcaaaaaaagaaaaa
>XM_034309799.1
TCTGTGttcttgtttaaaatatttggaCTCTACGTGCATTAGCATCATGCTTGCAAGGCTTGGGGTGTTCATCTTCGCTTTATCCTATGTTAAATGCCAGAAGGTTGTCACCCAGACACCTGTGTCACATACCGTGAATAAGGGAGACACGGCCACATTCATGTGCAATGTTGTAAGAGATGATGATGCAAGCGCTAACTGGTACAAGCAGATTCCCGGAGGAGTTCCCCAGTATGTCTTAAGACATTATAATTCCTGGAGCACTCCTAAATATGGATCTGGCTTCTCTTCACCCAAATTTACATCTACAAGCTCATCTAAAATTGATTAcaacctaataataaataatgtggaGGTGGAGGACTCTGCAGTGTATTACTGTCAGACATATGACAGCACTGCCAAAGAATATGTGTTCGCCCAAGGAACAAAGTTGATTGTGACTGACCATGCTCTCCCAGCTCCTGTTCTGACAGTTTTCCCTCCATCCAGTAACGAGCTGAAGTCTAACAAAGTCACTGTAGCATGTGTAGCCAGTGACATGTCCAGCGGTTTTGCTGAAATGCACTGGCTCGTAGATGGGAGCGTAATCACCAGTGGAGTCATCACTGGATCTGCAGCTCAGCAACCAAATAAGAAATTCACCTCGAGCAGCTATCTGAGTATTGACAGCTGCGAGTGGGAAAAAGATAAGAGCATAACATGCAACGTGTCTTCTGGAGGAAAACAAGCATCAGTGGAAATTAACAAGTCTCAGTGTATTGAGTGAATCAGATACAATTTGTTTATCTTAATTCTCTGTCAAATTTAATAGAGATCTTAGATCTTGAAAATGTTGCTTTCCTGCCAAAGTAATGTTTGAGCTTTTTGTTTCAAATCACCAATATGgtacaattttaataaagtgcaaacattgaaaaataagcaaaaaaagaaaaa

Function

GO: NA

KEGG:

id description
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04380 Osteoclast differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309798.1 True 939 mRNA 0.40 4 11023672 11025804
XM_034309799.1 False 939 mRNA 0.41 4 11023672 11025804

Neighbor

gene id symbol gene type direction distance location
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding downstream 12122 11009287 ~ 11011550 (-)
tbl3 tbl3 coding downstream 60832 10943238 ~ 10962840 (-)
LOC113527942 tom1l2 coding downstream 125132 10872034 ~ 10898540 (-)
srebf1 srebf1,LOC107691218 coding downstream 154588 10847701 ~ 10869084 (-)
nptx2a nptx2,LOC108275595,LOC107665931,LOC107724745,LOC107713953 coding downstream 465872 10546321 ~ 10557800 (-)
baiap2a LOC108277336,LOC108432239,LOC107711237,LOC107672452,LOC107670476 coding upstream 48713 11074517 ~ 11145832 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding upstream 121590 11147394 ~ 11152163 (-)
ttyh2l LOC108277373,LOC108432236 coding upstream 129111 11154915 ~ 11191515 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding upstream 400481 11426285 ~ 11438335 (-)
LOC113528663 NA coding upstream 406706 11432510 ~ 11432628 (-)
G208998 NA non-coding downstream 389522 10633535 ~ 10634150 (-)
G208980 NA non-coding downstream 504725 10518342 ~ 10518947 (-)
G208964 lmtk2 non-coding downstream 573132 10447736 ~ 10450540 (-)
G208951 NA non-coding downstream 681450 10341911 ~ 10342222 (-)
G208771 NA non-coding downstream 732787 10221710 ~ 10290885 (-)
G209189 NA non-coding upstream 63209 11089013 ~ 11144984 (-)
LOC113528410 NA non-coding upstream 192855 11218659 ~ 11221378 (-)
G209529 NA non-coding upstream 363156 11388960 ~ 11389231 (-)
G209538 NA non-coding upstream 374918 11400722 ~ 11401423 (-)
G209541 LOC108256081 non-coding upstream 377274 11403078 ~ 11476796 (-)
tecpr1b LOC108276900 other downstream 553154 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1291106 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1549194 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 1604088 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 1820032 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 616353 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 674045 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 1271972 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 1308050 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1520529 12546333 ~ 12559213 (-)

Expression


Co-expression Network