LOC113523776 (LOC108276501)


Basic Information

Item Value
gene id LOC113523776
gene name LOC108276501
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25696382 ~ 25704937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309800.1
GGAAAATGTTTCTGATCTGGGTGAGaggtttattatttacaacagcAGACATGGACGGAGCGCTTATACACGATCATACGGTGTGCAGACAGAGATGGTGGTGGTTCTCCAGCTGGCTGCCCTCCTGGTGTCCCACCTCACCGTCTCATCTCAGAAACGCCGAGGACAGAATTCTCCAACCTCTGACACACAGCTTCAGCAGACGACATGTCCCGATATCTAACGGGAACTACATCTGGACTCTGAGCTTTGACGAGACTCAGGACTCCGAGCGTTCTCGGGTCCCGGTGGTGCTGCTGCATGGGTTTGGGGGTGGAGTGGGATTGTGGGTGAAGAACCTGGCTGCTCTGGCGCTCAGCGGGAGAACCGTGTACGCTCTGGACCTGCTGGGCTTCGGCCAGAGCAGCCGACCGATGGCAGGCAGCCACGCCCAGGAAGCCGAGGAGAAGTTTGTCCAGTCGCTGGAGGAGTGGAGGGAGGCGGTGGGGGTGGAGCTTATGATTTTGTTGGGTCATGACCTTGGAGGGTTCGTCTCCACGGCTTACGCTctgacacacccacacagAGTGAAGAACCTGATCCTGGTGGAACCGTGGGGTTTCTCAGAAAGGCCCGAGGTGCAGGAGGTCCACAGCAGGATCCCCATGTGGGTCAAAGTGCTGGGAAAAGCGATGAATCCATTCAACCCCCTCTCACTGCTCCGACTCGCAGGCCCTctgggtcctTTGTTGTTACAGACTCTCAGGTCAGactttaaacagaaatattcgGCTGTGTTTGACGATGACACGGTGCCTGATTATCTTTACCACCTTAATGCACAGACACCCAgCGGTGAGACAGCGTTCAAGAACATGACCGTCCCTTACGGCTGGGCCCAGCGTCCCATGATGCAACGTGTGGGAATGCTCGATCCCACAATCCCAATTTTCATCATCTGTGGCTCCCGTTCCTGCATCGATAGCCAATCAGGACACGCCATTCACGAGATGCGACCCAACTCACAGACAGACGTTATTGTCATCAGAGGGGCGGGACATTACGTGTTTGCAGACCAATCAGAAGATTTCAACGAGGTCGTACTGAAGATATGCAGAGACGTGAATAatgaaggagagacagaagtggaaaagaaggaaaaaaggaaagagaaaggggAGAAAGAGTGAAGGGGAAGGATGTTTATGTATTAATAATACAGTTTAGGagtaaagggagagagaaaaaacgaAGTAGgaaggatttttctttttttcattgtccatatattacatatgtgtatgtattttataataCTTTATATATTCTAGAaaatttcacagattttttgtcattaatatttgtttaatttaaactcattagtttttaatattatttactttatctgTAGTTTTTGTTTAATCACACTGCTGGTTTTTGCATCAGTATTTGATGGAGCTGAACACAAAACCCAAATAAAACTTTAGAGAAATAAGAATTTAGCAtctgcactaacacactataATAGCATTGTtgtaataaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309800.1 True 1523 mRNA 0.47 7 25696382 25704937

Neighbor

gene id symbol gene type direction distance location
rpl14 rpl14,LOC107710319,LOC107688416,LOC107654689,LOC107706260 coding upstream 4958 25188851 ~ 25691424 (+)
sgo1 LOC108258632 coding upstream 12770 25675922 ~ 25683612 (+)
zgc:101785 NA coding upstream 54939 25629361 ~ 25641443 (+)
crybg2 LOC108255824 coding upstream 69773 25616423 ~ 25626609 (+)
LOC113523795 NA coding upstream 82074 25570311 ~ 25614308 (+)
LOC113523775 NA coding downstream 1927 25706864 ~ 25710104 (+)
LOC113523761 leg,LOC108276513 coding downstream 6258 25711195 ~ 25717139 (+)
LOC113523792 grap2 coding downstream 205745 25910682 ~ 25922856 (+)
LOC113523801 LOC108276446 coding downstream 226494 25931431 ~ 25938225 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding downstream 251829 25956766 ~ 25972966 (+)
G216817 NA non-coding upstream 300499 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 429272 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 465910 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 507339 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 510980 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 91367 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 195137 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 362811 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 375217 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 435640 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 898704 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1157265 24529679 ~ 24539117 (+)
G216197 NA other upstream 1238378 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1366382 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1775979 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 552434 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 600509 26305446 ~ 26306768 (+)

Expression


Co-expression Network