bod1l1 (bod1l1,LOC107705061)


Basic Information

Item Value
gene id bod1l1
gene name bod1l1,LOC107705061
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20400480 ~ 20412128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309810.1
TCAACGCCGAAATCAAAATATTTCCATAGACAGGGGTTGATCCTCAACCCGAGTCTCTAGATATCGTTTTAAAACtgttaaatcattaaaacagCCCAGATGGCTGGTTTACCTCCGGGTGACCCTCAGCTGGTCGCCATGATCGTAAATCACTTAAAAACACAGGGACTTTTTGACCAGTTCAGGAGAGATTGCTTGGCGGATGTCGATACAAAGCCTGCGTACCTGCACCTGAGACAGCGAGTGGACAACTTTGTGTCTAATCACCTCTCTAACCACACATGGAGTCCTCAACTCAACAAGAACCAGCTGAGAAACAGCATCAGGCAACTCGTGCTCCAGTCGGGCTTGCTGGAGCAGGGCGTAGATCGGATTGTAGCGCAGGTCGTCGACCCCAAAGTTCAGCACACCTTTCGGCCACAGGTGGAACGTGTTGTCCGTCAGTTCCTGTCTCCTGGCAATCACATGGAGGAGGACGAGCCTCCATACACTGTCGCACAGGTGGAGGAAAACCAGGAAGCTCAGCTGCCATCTCCAGCAATCTCCTCGACTCCAGTCTCAGACTCCGCCCCCTCTCAGAGCCACGATCCCTCTGTTATAAAGACAGAAGACGGAGGAGAGGAAGACATGAGCCTGGTAGAGGAGGATgagaaggaagaggagaggaCAAAAGAGGAGGATGAGCAAGAAGAGAAGCTCGGAGGGAATGAAGATGAGACGAGcaaagagcgagagagggaggaggagagacagaaagagacaatgGAGGTGGATCAACAGACTGAGGAGCCTGAGGAGgtcaagaaagaggaagaagaagaagagcgagaggaggagaaggaaaagaaaggagaagaggaaaaagaaaagaaaggagaggaCGCAAAAGATAAGAAAGGGTCAGGGAAGAACAGGGAGGAGAGCAGCACTGACAAACTGCACATTCGCCAGAAAGCAAGAGAACGACTGAAAGAAGAATACTCTCTGGAGGACTCGGATCTGGAGGGTTTGAGCGACATCACGGTGAGTTCAGTCCACACAAGCGACCTTTCGTCTTTTGACGATGACAGTGAGGACGAGGAGCCACCTTCTGAATCCACCGAGGAAGGAGAGATCACCTCAGAAGATGAAAAGGTTCAGAAGAAAGCTACCGGAGAGGAATCTGATGAGAATAAGGAGAAAAAACCTCGTGGATCCCGCCAAGGCTACATTCACAAGCCTTTCCTTTACTCTCGTTACTATAGCGACTCTGACGATGAGGTTACAGTGGAGCAGCGACGTCGTTCTGCTgCGAAGGACAAAGAGGAAAGACTGCTGAAGCGCCAACAGAACCGGGAGCGTCTTGAGGAAAAGAGGAGGCAGAAGGCGGCGCAGGCAGAGCTACAGGAAAAGGAAAAGCAGGAGGTTCAGAGACCTCAAGCAAAAGAAGcaaggaaagagaagaaagttctggaaaagaaGGTGGCACTcagcagaaagaggaagagagactcacgGAAAGAAGACGACTCTGGCAGCAAGAAGAAGAGTGATGGAGATCCTGAATCCGTAAAGAAAGATGATGCAGTGAAGTTTAAAGCAATCTCTCAGAAGCCTGTTAAGAAGCTGTCTGAGGAGGAGCAGCGGAGGAGGAAGAGCATTTCAGAGGACTCAAACGAACCACGCAAAATCCTTGACAAAAACCGTACACACTCGTTCATCCTGGACCTCGAGCTGGGAACTGAGGAGGCTCTCAGACAGAGAGGCGGTGGGAAGAATGAGCGACATGCTcgcagagagaaagagcgaaaagagaatgagaaagagcgTGGTGTGTCAGATGAACGAGCCAGGTACAAACAGAAGCCAGAAAATAAGAAAGGAGGAGAGGCTGTGGCagaggagaaggagggaggggtGGTGAAAGGTACAGTTGATGACAAAGTAGAGAAAAAAGGCTCAAAGGTTAAAGGAGACAAGAAGGGCTCTGTGTCAGGAAGGGAAGGAAGGCTTTCTGTGATGGAGGGATCAGTCCCAGAGGAGGGAACGACCAAGGatttgaagaaagaaaagatgccCTCAGAGactatgaaagaaaaaataaaaggagaaaaatcaCTGGGCAAGACTGACCCAAAACAGCAGCATCGCCTGGATTCTACTGGCTCCACAGAGGAGAGGTCCGAGGGTGAGGCTGCTTCTGATTTCAACAAGAAGAAAGACAAGCAATCTAAAGACATTTTGAAACGGTCAAAAAGTCACCCAGAGGTTAAATCTCTAGAGAAGGTAAAGGTCAGACAAGATGGCAAAGATGTAGGTGCTGGTGGTAAAGACAAAAGCTCCACATCAGAGGCTCCCAAACATAGCTCAGACACAAAGGTCAAGAATTCAGAGGCAGGACCAAAGGTCAAATCTGTGTCAGAAAAAACAAGATCCAAGTCCAGAGATGACTTGAAATCTCAGAGTCCATTAATGACCAAGACAGACAAGAAAGCCCAAGGTCAGGAAGCCAAGGgtaaagcagcagcagctcctAGCAAGTTGGAGTACtcaaaggagaagaaaaaggaggGAGTGATGAAAGAGGACAGGAGGGTCTCAGAAGACCGTGTTGAGAAAGGGAAAGATGCAAAGAGCACAAAGAAAACAAGTGAGAAGAAGACAAAAGAGTCAGAGAAGAAGGGAGGAGACAGTGAAAACGAAAGAAGAATCTTGGAAGCAGATGATCTTTCTTCCAGTTCCTCTGTTCCGTCAGCAGTTGCTGAAGAGGTACAGACTGCAGGTGGAATGGCTTCTCAGCCTTCAAACACTCAAGCAcaacaagcttcagaatccCTCACAACGTCTGACCTTACAGTTCAACAAGTCTCAGAGTCTCTTGGTGAATCAGAACTCAAAACCCCACAGGTCTTGGAGTCCCTTACAGAGTCTCATGTCTCAAACCCACAGGCCTTGGATTCTGCCGCAGAGTCTGATTCCACagaccagtccatcacagagtcTCTCAGAAAGTCTGACCTTACTTCAGACTCACAAGCTATGGATACAGAGTCTGATCTTACAGCCTTACAATCCAGAGATGCAGAGTCTAATCTTACAGCCCCGCAAACCATGGATACAGAGTCTGAACCTACAGCACCTCATGCCATAGATACAGAGTCTGTCATTACACCCCCACAAGCCAATGCTGCAAAATCTGAACTCGCATCACCACACGTCTTTGATGCACCCACAGAATCTTCTGTAAAAGAACAAAGTCCACCTACAGAGTCTGATCTTGTTAGTACAACACCACTGCAGTCCTCAGAATTAACTTCAGTATCTGATCTTACAGTTCCTCAGTCTTCAGATTCAAATCAAAGTTCTGATCTCATGAATCCTAACTCCTCCAAGCCTAATTTCACAGTTCCTGAAATATCAGACATAAAACCAAATACTGATCTCGCTGTCCCTCAGTCCTCAGTCTCAATCCCAACATCCATTCTCATGGTTGCTGAGTCCTCAGACTCCATCCCAGAGTCTGATCTCACAGTTGCCCAGCCCTCAAACTCAGTCCCAGCATCTGAACTCACAGTCCCTCAGGGTTCCGACACACTTCCTAATCCAGTTCCTGCTGAAGCTAACAGCACCTCTGTCCCTGACGACATGTATGATGCCCTGAGTGACATCACTCCAGATCCTGACGACGAGGAAGAGGCCACCATGAGACTGGCCGAGAGCCAGCCTCAGCCCTGTCCCATCCCTGCAGAGGCTGATGCCCTCCTGTCCTTGATGGATGTCTGTGCTTCTGCAGCTGTAAGCAACTCCACTGGTGCTTCTGATGGACAGGTAGCTGAGAGTTCTTTCCGGGATGCGGATATAAAGATGAAGGAAGCAGCACTCACATTACTCTCCATGGATCCAGATCAGGCGGTTTCACCAAGTTTTATCACTGAAGATACACATGTTGCTGGGCAGCAGGTGGAGTCTTTAGCCTCAGACCTGGTTGATGTGACAAGTGCGATAAAGCCACCTAAAGAAGTTACGAATGAGTCTGAAAGTGAATCATCTGCTCGTGACTCAGAGGAAGGAGACAAACGCACTGAAGctctAGCCAACACAGCCATTGAAGGAAAGGCCACAGACACAGTGTCTAAAGAGGAAGCAACATCTGAGATCAACAACGGTGAATCAAAAACAAAGTCTGACGTTTCTAAACCAGAAATCTCTGCTAATGATGAACCAGCAGGAGAATCCGCTGAGACTGATGCCagccaaatacacacacaaactccgAGTGAAAGCATTCACACAGCTGAGGGCACAAAGAGCAAAACAGAGAACACTGTGCAAGAGGCCCAGGCACAGGAGGCCCAGGTGCAAGAGGCACCAGTGCAGGAGGCACCAGTGCAGGAGGCAACCACGCAGGAGGCACCCACACAGGAGGCACCCACACAGGAGGCACCCACACAGGAGGCACCCACACAGGAGGCACCCAAGTTGCAGGAGCAGGAGACCCAGATGCAGGAGTCCCAGACACAAGAGGCAAACGCACAGGAGCAGGAGGCGCAGACCCAGGATGTGCAGACACAAGAGGCAGAGGAGCAGGAAGCACATGTTCAGGAGGCACAGGCACAGGAGGCTCAGACGAATAAGGCACAGGAAATGCAGGATACCCAGCTGCAGGAGGCGCAGGGTCAGGAGGTGCAGGAGGCAAAAGCACAGGAGAAACAGGAGCAGGAGACACAGGCGCAGGAG

Function

symbol description
bod1l1 Predicted to enable protein phosphatase 2A binding activity and protein phosphatase inhibitor activity. Predicted to be involved in negative regulation of phosphoprotein phosphatase activity. Predicted to act upstream of or within cell division. Predicted to be located in chromosome; cytoplasm; and cytoskeleton. Predicted to be part of outer kinetochore. Predicted to be active in centrosome; spindle microtubule; and spindle pole. Orthologous to human BOD1L1 (biorientation of chromosomes in cell division 1 like 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309810.1 True 4716 mRNA 0.50 14 20400480 20412128

Neighbor

gene id symbol gene type direction distance location
LOC117598840 bod1l1 coding downstream 5 20394684 ~ 20400475 (-)
nkx3-2 nkx3-2 coding downstream 13855 20383757 ~ 20386625 (-)
rab28 rab28,LOC102780097,LOC106600633,LOC107712918 coding downstream 25904 20342473 ~ 20374576 (-)
LOC113527919 clnk coding downstream 204967 20177265 ~ 20195513 (-)
wdr1 wdr1,LOC107717326,LOC106565198 coding downstream 242093 20142877 ~ 20158387 (-)
trnal-aag_9 NA coding upstream 721 20412849 ~ 20412930 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding upstream 1972 20414100 ~ 20418381 (-)
tmem107 tmem107,LOC108274527 coding upstream 7630 20419758 ~ 20424672 (-)
LOC113528321 fbxl12 coding upstream 14631 20426759 ~ 20430515 (-)
LOC113528637 fat4,LOC107717300,LOC107694441 coding upstream 195496 20607624 ~ 20697160 (-)
G214159 NA non-coding downstream 344336 20020552 ~ 20056144 (-)
G213879 NA non-coding downstream 736718 19663337 ~ 19663762 (-)
G213716 tnrc6a non-coding downstream 978065 19417184 ~ 19422415 (-)
G213549 NA non-coding downstream 1327495 19023758 ~ 19072985 (-)
G213407 NA non-coding downstream 1551333 18792435 ~ 18849147 (-)
G214325 NA non-coding upstream 23924 20436052 ~ 20438834 (-)
G214331 NA non-coding upstream 33395 20445523 ~ 20445748 (-)
G214493 NA non-coding upstream 366637 20778765 ~ 20781702 (-)
G214526 NA non-coding upstream 429303 20841431 ~ 20841634 (-)
G214626 NA non-coding upstream 490970 20903098 ~ 20903837 (-)
hs3st1 hs3st1 other downstream 186851 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 262267 20039787 ~ 20138213 (-)
lyar lyar other downstream 416331 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 951921 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 1572746 18823471 ~ 18827734 (-)
spry1 spry1 other upstream 487929 20900057 ~ 20905271 (-)
fgf2 fgf2,LOC107717315 other upstream 602311 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 824674 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 940153 21352281 ~ 21359190 (-)
G215187 NA other upstream 1264143 21676271 ~ 22269092 (-)

Expression


Co-expression Network