LOC113546929


Basic Information

Item Value
gene id LOC113546929
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22537502 ~ 22548866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309815.1
ATGTTGACAGAGCTCTTCCACCATGAGGCAgagatgatggatgatgatagCATGGCAAACACTGCCTTAACATTTGTATTTCTCTTCCTCATCACCCTCTTCTACAGCATCGGAGTGACTGTTATCAAGTTTATCTCACTGTTTCTAGCTCAGCGTGTGGCTGAGCCCAGAATCACCATCAGTATCAAGACAACAGACAAGGATGTTGATCTGCTTTGTTGGTTGGATGGTTTTCATCCTAAAAAAATTGATGTTCAGTGGTACAAGGGTGATCAGGTGCTCAGACAGGGAGAAACCATCAAGATATTCGAAGATGTCAGCACTGGAGAAAAGGTGTATTCCGCAATGAGCCAAATCAGGATTAGACAGCAATGGAATGAAGGCACAGTGTTCGCCTGTAAGGCCACACACAACTCAACCTTCAGTGAAACATGGAGCAAGTGCCAAGCTGCTCCCACATCCACACCACAGATACGTCTGGAGAAACCTCGTCTCATGTCAGTATTGACAGATTCACAAGTAACAGCCTCCTGTGTTGTTGAAACTGAGTACACCATCACCAAAGTGTCATGGCTTGTAGATGGAAAGCCAAAAACAGGCACAGCCATCTCGACGAGACTGGGCGAGACAGTTAGCAACCTGACTATCTCTACAGAAGAATGGAAAAACTCGGGGACAATAAAATGCACAGCTGAACATCTATGTTTCGGCAAAGTAGAGAAGACGATTGATATTATAGAACCTGTGAAGAAAACTCCTACAGTGGAAATCAGGAGGATTCTTGCAGACATACTGAAGGGACACAGTGCAGTGCTGGAGTGTGTCGGAAGAGATCTGCCCTCTGGCGAGCTCTCTGTCACCTTCCAGGCCAATGAAGCCATGTTCCCTGACGTTCAGTACGTGGATCTGCCCAAAGGCCTGGAAACACTGACTGTACGCTTCACTGTTCCCAAATCACACCAAACCAAAGACAAACGTTTCACCTGTCAGATTCAGCAAAGCCATTCCATGCAGTGGAAGTCCAGTTCTACAGGAAAACTTTTTGATGACCCTTCAGTGGAACTTTCAGCTGTTTCCAGCATTGACAAATCCAGATCAATGACACAAAAACTTATTTGTTCTGGAACTGGATTTAACCCAAAGATCAAGTGGCTCCCTGAATCTTTGAACAATCCTCCTTATGAAGTAACGTTGCAAGCAGATGGACGTGTGAAAGTGTCCAGTGAGATATCAGTTCCTCAACAGGAGTGGAGTAATGGAGTGGAATTTAAGTGTGAGGTTAGTGATCAAGATCATCCCAAACCTGTCCAGAAGAGCACCAGTGTTTGTGCAGCTCATTCAAATTACAAACCACCGATAAGTCTGGAGAAACCTCGTCTCATGTCAGTATTGACAGATTCACAAGTAACAGCCTCCTGTGTTGTTGAAACTGAGTACACCATCACTAAAGTGTCATGGCTTGTAGATGGAAAGCCAAAAACAGGCACAGCCATCTCAACGAGACTGGGCGAGACTGTTAGCAACCTGACTATCTCTACAGAAGAATGGAAAAACTTGCAGACAATAAAATGCACGGCTGAACATCTATGTTTCGACAAAGTAGAGAAGACGGTTAATATTATAGAACCTGTGAAGAAAACTCCTACAGTGGAAATCAGGAGGATTCTTGCAGACATACTGAAGGGACACAGTGCAGTGCTGGAGTGTGTCGGAAGAGATCTGCCCTCTGGTGAGCTCTCTGTCACCTTCCAGGCCAATGAAGCCATGTTCCCTGACGTTCAGTACGTGGATCTGCCCAAAGGCCTGGACACACTGATTGTACGTGTCACTGTTCCCAAAACACATCAAACCAAAGACAAACGTTTCACCTGTCAGATTCAGCAAAGCCGTTTCATAAAGTGGAAGTCCAGTTCTACAGGAAAACTTTTTGGTGACCCTTCAGTGGAACTTTCAGTTGTTTCCAGTGTGGCTCAATCTGCAACAACGACACAAAAACTTCTTTGCTCTGGAACTGGACTTAACCCAGAGATCAAGTGGCTCCCTGAATCTGTGGGTAACGCTCCTAGGGAAGTAACAGTGGAAGGTGATGGACGTGTGAAAGTGTCCAGTGAGCTATCGGTTCCACAGCAAGAGTGGAATAGTGGAGTTAAATTTACCTGTCAAGTCAGCGATCAGGATCCTCTCAAACCTGCCGAGAAGAGCACCAATGTTTGTGCAGTGACTCCAGCTTTTGCTCAGACAGCAGAGGTTTTCCTGTTAGCTCCCTCCATCAGTGATATGAGAGCAAATGATCAGGTCTCTGTCACATGTCTGCTGGTGGGCCACAGGCTCAAGGACTTCACGATTATTTGGAAAGTAGGAAAGGACAGTTCCTCTCACGGTgtgaccacacacactcccaaagcCCACAGCAATGGAACAGAGAGTCTCCAAAGTGTTCAAAAGGTTCCGGCTGCAATGTGGAACGCATACACAAGTGTCTCCTGTGAGGTGAAACACCTCTGCTCCAACAAAACACAGCAACACATCATCTCTAAAACCAGAGAAGTCAAAAGTCCCACCATCCGAATTTTCATTCCCAGTGACGACGATCTCTCAGGATTTCACAACACATCTCTTCTCTGCTTGATCGACGGCTTCCACCCTGCTGATATCTCTGTGCACTGGGAGCTGAACGGCAAACGGCTGGATGCGTCTCGCTTCACCAACAGTCCAGTCGGCATTCGCTCTGCATGGGGTGGTTATTCCATGCACAGTGCACTGATATTACTAGCATCAAAAAGGGAAGATGGCAATTTTTCCTGTGTGGTCAGCCACGAGTCATCCAAAGAGCCGATCATCAGCACAATAGACAACATATACGCCTCTGTGAATGAATGTCCTCCCTCTGTGGAGCTGCTGCAGGGTCGAGATGAGCTGGTGTGTCTGGTGTATGGTTACAGCCCCTCTGCCATTAACATCACCTGGCTCCAAAACAGTGTGAGTGTACAGCATGAGCATAGAACCAGCAGCTCTGCCAAAGGGCCGGATGGGAAATTCAGCATTAAAAGCCACCTGAATGTCAAGGCCTCTGAATGGGCACCTGGAGCCACATACACGTGCCATGTCGAGCATATTACTGGCGTCGTCACTCgcagcatctccaaaacagAATTTACTGAAGAGACGATATACTTTGATGAGAACAAGTCTGATGCTAGCACTCTGGACCAGGCTGAGGAAACCTGGAACATGGCCTGTGCCTTCATCATACTCTTCATCATCTCTCTCCTCTATGGCTGTTCAGTGACTCTGGTCAAAGTGTAAACTGCTTGATCAGCTGTTTAGGGCACCTTTTAGAGTTTAGATTAAGACTTATGTAATGCTTTATTGCTGTATTGTATTTGtctgaatgaaaacaaaacaattctTAATGACTATTTTTAAGTTGATAGATGCAATGAGTaaaaagggaaataaataaagaaaaaaataaattaacttgTTACTTGATGCTGGAAATTAGAgtttctttcagctgttgttttttctttttttattcaaatgaacgatacacaccgatcagctataacattaaaaccactgacaggtgaagtaaaTAACAATGATTACCTTGTTACAATGGTACCTGTCAAAGTGTGGGATAGTGAAcggtcagttctcgaagttaatgtgttggaagcaggaaaaatggccaagtgtaaggatctgagcgactttgacaagggccaaactgtgatggctagacgacttgGTCAAAggatctccaaaacagcaggtctttgTGGAGTGTTCCCACTATGCAGTTCCCAGTATCCATCGAAAGACAACCaatgaaccggcgacagggtcatgggcgcccaaggctcactgaagcgcgtggggagcgaaggctagcccgcctggtccgatcccacagaagagctactgtaacacaaattgctgaaaaagttaatgctggctatgatagaaaggtgtcagaacacacagtgcataagGGGCTGTTTAGCCACAGACCattcagagtgcccatgctgaccacTGCTGAAAGCGCCTACAGTGGGCACGTTAGCATCAGAACttgaccatggagcaatggaataAGGTCGCCTGGTCTAacgaatcacgttttcttttacatcatgtggaaggccaggtgcatgtgcgtcacttacgtggggaagagatggcaccaggatgcactatgggaagtaggcaagccggcag

Function

GO: NA

KEGG:

id description
K06551 SIRPA_B1_G, CD172; signal-regulatory protein alpha/beta1/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309815.1 True 4227 mRNA 0.46 14 22537502 22548866

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 868620 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 871758 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 873962 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 876463 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 878395 21658502 ~ 21659107 (+)
cckb LOC108274239 coding downstream 65993 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 184869 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 232500 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 592848 23141714 ~ 23143760 (+)
LOC113546924 NA coding downstream 598331 23147197 ~ 23156708 (+)
LOC117598850 NA non-coding upstream 1726 22495208 ~ 22535776 (+)
LOC117595678 NA non-coding upstream 36132 22500883 ~ 22501370 (+)
G215153 NA non-coding upstream 131978 22401950 ~ 22405524 (+)
G215107 NA non-coding upstream 136182 22133202 ~ 22401320 (+)
G215149 NA non-coding upstream 193865 22340221 ~ 22343637 (+)
G215294 NA non-coding downstream 175821 22724687 ~ 22726646 (+)
G215336 NA non-coding downstream 186905 22735771 ~ 22735986 (+)
G215343 NA non-coding downstream 229750 22778616 ~ 22779241 (+)
G215295 NA non-coding downstream 278155 22827021 ~ 22830832 (+)
G215350 NA non-coding downstream 292478 22841344 ~ 22909078 (+)
LOC113546930 LOC108275153 other upstream 46591 22463100 ~ 22490911 (+)
LOC113546936 NA other upstream 66824 22470179 ~ 22470678 (+)
LOC117598940 NA other upstream 139932 22397112 ~ 22397570 (+)
LOC117598922 LOC108275153 other upstream 146680 22390359 ~ 22390822 (+)
LOC117598883 NA other upstream 149353 22387697 ~ 22388149 (+)
higd2a higd2a other downstream 216948 22765814 ~ 22769636 (+)
trnat-cgu_7 NA other downstream 231420 22780286 ~ 22780576 (+)
G215347 NA other downstream 286798 22835664 ~ 22835902 (+)
G215621 LOC108277208 other downstream 588380 23137246 ~ 23170553 (+)
LOC113546919 LOC108278588 other downstream 1182588 23731454 ~ 23741390 (+)

Expression


Co-expression Network