cdhr2


Basic Information

Item Value
gene id cdhr2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22706554 ~ 22729853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309816.1
ATGATTCACGTTTACAGCAGTGAGACGGTAAGCAGTTGGGCTCGTACCAGGCAAAGGTCTCACCCTAACCACAGTTTCATTTCACTCAAGAGACGACTCCATCAGAACAGCATCGAGGACGAAAATGGGGAAGGCTACAGTCAGAATGTTCCGGTCATTAATATGTCTGTAGTGACAGTGAGGGAAGATCTACCTTCAGGCGAATTCGCATTTAAAATCCAGGCATATGATCTAGACAATGACCCTCTGACCTATGCGATCACCCTCGACAAAAATAACCACTTCAGTGTGTCTGAAACTGGTGATGTCTACATCAATAATCCACTCGACCGAGAGACTAACGAGTTCTTTCCAATAACAGTTTCTGTTAGCGATGGAACTCTCACTGCGACAAAAGTAATTAATGTTGTGGTGCAAGATGCAAATGACAACGCACCAGTGTTCCAAAATGCACCATACAACATAAAAGTGCCAGAGAACACCCCTGTGGGCACTACAGTGTTGAAAGTGACAGCGACGGATCCTGATGACGGATTAGCCGGGATAGTCTCATACAAAATCGATCAGgcCATCCCTGTTGAAGGACTCAACGTGTTCTCTATCTCTCAAAAAGATGGAGATGTTGTGTTGAACGAGGCACTTAGTTTCACAGAGAAGAGCACATTTTATCAGCTACAAATCAATGCGTCTGACGGCGGTGGACCACTTCACAGTGAAACCAACATCATTCAGTCCTCCAGCGCCACTGCCTTCATCACAATAGTTGATATACCAGACCTCGATCCTCAGTTCTTAAATCTCCCAAACACAGCTCGTGTGATGGAGCATTCACCGGTTGGGACATCCGTGTTTAAGGTTCTGGCCAGAGATCCAGACACAGGGATCAATGACATCATCAATTACTCCATCCAGGatgcCAGCGTGTCCGGTCTGTTCCAAATAGATTCGGGTACTGGCGTTGTTACTGTCATGGCTGACATTGACCGAGAGGCCTTACTGGACTCTGATGCTATTGTGAAGCTCACTGTGAAGGCCACTGAAGCTAGCTTGAATGTGAATGGCATCCACGCGAACACCACATCTACGCTCGATATCCAGATTGACGATGTGAATGACCAAAAGCCGCTCTTTTACAAGTGCAACGGGGTGGATTGCACACAGACGAACGAGTTCACCGGCGAAGTGGACGAGCATGCGTCCGTCGGTCTGTCCATCACAGGATTAAACATGACGGTCAGAGATATAGACTCGAACGAAAACAGCCGTTTCAGGCTCCACCTCGAGGGAACAGATAAGGACGCGTTTTCTGTCTCACCCACAGATGACATGTCGGACCGAGCTGTTCTGATCCTGATCAAAAACCCAGCCGATGTCGACTACGAGAAAAAACAAACCATGATCGTGCAGGTGGTGGCCACAGATGCCGGAAAACCTGAATTTGTGTCTACAGCTACGGTCACCATTAAAGTCAACGACAAAAATGATAACAGCCCTACATTTGAAAAAGATGACTATAAATTAACTGTTCCAGAGCACTGTGAAAATGGCACCATCTTGGACACCATTACGGCGACAGACGCGGACGCGCTGGACGATGGCCTCCTCACCTACAAACTGTTCCCGGAGAGCATACCATTTGATGTCTTCCCAAAAAATGGGACAGTTTATgtgaaaaatggagaaaagctGGACCGCGAGAGCAAGAACACATACTCTGCGACGCTGCAGGCCCGAGACTCAGCGGGTAACGTGGGCACCACCGTGCTGGATATCACCATCGAGGACATTAATGACCAGACACCACAGTTTATCCGAAATCCATATGAAGGCTTCTTTCCCGAGAACAAAGTGCTGGTGTTTCAAGTCAAGGCTCAAGATGACGATGAGCCAGGCTCTCCCAACAGCATCATCAAGTACAGCATTGAGCCTAGTGAATACAGTAGCAACTTCACTATCGATGAGAACACTGGGGAAATAAGGAGCAAAGGCCCTCTGGACCGCGAAGACATCGATATCAACCTGAAAGGAGTGATCACGCTGAACGTGACAGCTACAGACATGGGCACGCCACCTCTGTCCAGTACGGTCAAATTCATCATCAACGTCGATGATGAAAATGACAACTCGCCTATGTTCCTGCAAACAGAATACACCTTTCATGTGAAGGAAAGCGAAAGAGGCGCCTTTGTGGGTTATGTGTACGCGACCGATGGTGATCAAACCGAGTTCAACAACCGCATCTCATTTAGCATTAAAAGTGGCAGCGGGGGCACCTTCCTGTGCCTGTCAGAGCTTGATGGTACAGGCTACCGAGGTAAGATCTTGGTGGATCCAGATGTGGAGCTGGACTATGAGAGTGAAAACAAGAAGTATACGCTGACGGTTGAGGCCACAGACCTGAGCGGGAATGCTGCTACGTGCACGGTATATATAGAAGTGGATGATGTAAATGACACGCCACCTATTTTACCTACCATGACAACGTTCAAGGTggaggagaacacaccaggggGGACGGTAGTAGGGAAAATTGTTGGGAGCGACGCGGACGGGAACCACTCACTGGTCTACGAGCTTGTTTCTACCTCATGCCACAACACCACATGGACTCCATGTGAGGAGCAATGGTTCATTCTTGAAAGCAGCGGGATTGTGATGACTGCAGAGGGTATAACAATCGATTATGAGGTGTACACTCAGGTGAAAATGACGGTTCGAGTGGTGGACCTTTACACGGAGAAGGGCAGGAACAGCACAGAAGATTTCGTCACGATTGATATTATTGACATGGATGACAATGAACCTGTGTTCATCCCAGTCCAGGAATTTTTTGTCCTGATTTCTGAGAGCATTGAAGAAGGCAAGAGTGTGGCCCAGGTTTCTGCCAAGGACAAGGATTCGGGAGACAATAAGAAGATAACGTTTAAGGTCACATTAGTGCAGTTTGTCAGCAACAACCAGAATGACGTGCCAACGGAGCTAGACCTAATTTTCTACGCTGAAACTGAGCAGCcggatgaaaatgaaaactatAAAGGAGTTATCAGGTCCAAAAATACACTGGAAGCTGATAAACAGGGGAAGTACTTGGTGACTGTGGAGGCAAAGAGCCTCAATCTCAGTTCGACTGAGGTACTGGAGCTCATCACGGTGGACAAGTCTTACAAGGTCGGCCTCCGATTTGATTCAACAGTAGAAGAAGTCAACGTAAACCTGCCGAACATCAGACAGGCCCTGACAGGAGCCACAAAAGCAATGGTGCATATTGTTAAAGTGTCAGCCTCATCAAGTGACACCACACAGAGGAAAGTGATGACTATTCTAGAGGCTTACTTCGTGTTTCTGAACGGGACAGCCCTCGACTCGGATGATGTGGGGAGGATCCTGAACTCGCAGTCCGTGTATGAAGAGTACGGCGTCATCTTGCAGCAGTACGGTCTCACCGGCATTACGGGAAACATAGAGACGACAAATGAAAACAACACAGTGTTGTTCATTATGGTGGGACTCGTGGCAGGGCTCGTGATCGTCCTGATCGTCACCACAACGTCACTGGTGTGCATTAGGAAAAAGTACAAGACAAAGCTGAAGGCGGCCAAGGCCATGAACACGGCAGCCATGGCGGCTACTGAGTACCAGAAGGATGGGCCTGTTGTTCCTGGAACCAACAAGTACACCAGAGAGggAGCGAACCCGGTCCTCAACCTGAACATTGATGCTTCCACAGACCTGGGCTTTGATGAGGAGGCATCTagtgcagacagagagagCCTCAATTCTCTGGACATGGATGTGAATTTGACTGATAAAGACACAGTGCCAatgatgATCattgaggaagaagaggaaaatgGCGACTCTTTGTACATTGAACCCCTGGGTGCAGCATTGGCTCAGAGAGGGAAGAAGAAAGGCTCAGAGGGTCCCAGCTTCACCTTCACCAACCCATCACTCAGCACCACAGACCTGTAACACACCATCACTCAGCTCTGAGCTGAAACTGGAAACACCACCACTCCACCTTCAGCCATAAAACTATACAGCTAGTTCTATAAATGGAACAGTGCAGAGTCAGCTCCTGTGGGTtaacatgccttttttttttttttttttaaaacctcagGAGACGAGATTTAGGATTA

Function

NR:

description
cadherin-related family member 2

GO: NA

KEGG:

id description
K16502 CDHR2, PCDH24, PCLKC; cadherin-related family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309816.1 True 4142 mRNA 0.48 31 22706554 22729853

Neighbor

gene id symbol gene type direction distance location
LOC113546904 LOC108258503 coding downstream 9731 22678164 ~ 22696823 (-)
LOC113546927 ctnnb1,LOC108256545,LOC108414240,LOC103034575,LOC107710337,LOC107706261,LOC107688361,LOC107654753 coding downstream 29806 22661560 ~ 22676748 (-)
trak1b LOC108275079,LOC108414239,LOC107706145 coding downstream 62291 22629881 ~ 22644263 (-)
topaz1 topaz1 coding downstream 124452 22552724 ~ 22582102 (-)
LOC117598896 NA coding downstream 1012920 21693183 ~ 21693634 (-)
faf2 faf2,LOC107594931 coding upstream 26128 22755981 ~ 22763871 (-)
unc5a unc5a,LOC107677380 coding upstream 97091 22826944 ~ 23035173 (-)
dok3 dok3 coding upstream 555855 23285708 ~ 23297814 (-)
LOC113546952 ddx41,LOC107749764,LOC107750345 coding upstream 568096 23297949 ~ 23309411 (-)
abhd18 abhd18,LOC104944271 coding upstream 599916 23329769 ~ 23338185 (-)
G215262 NA non-coding downstream 162574 22446122 ~ 22543980 (-)
G215269 NA non-coding downstream 198691 22475021 ~ 22507863 (-)
LOC117598972 NA non-coding downstream 225632 22477976 ~ 22480922 (-)
G215249 NA non-coding downstream 308803 22390356 ~ 22397751 (-)
G215228 NA non-coding downstream 509142 22164570 ~ 22197412 (-)
G215507 NA non-coding upstream 3876 22733729 ~ 22734095 (-)
G215509 NA non-coding upstream 7423 22737276 ~ 22737479 (-)
G215494 NA non-coding upstream 24707 22754560 ~ 22755107 (-)
G215489 NA non-coding upstream 51470 22781323 ~ 22815252 (-)
G215493 NA non-coding upstream 58363 22788216 ~ 22797514 (-)
smim13 smim13,LOC107559689,LOC107669968,LOC107551766,LOC107734024 other downstream 2071 22656542 ~ 22704483 (-)
LOC117598969 NA other downstream 286644 22399685 ~ 22419910 (-)
LOC117598814 NA other downstream 342289 22326726 ~ 22364265 (-)
LOC117598975 NA other downstream 384821 22321174 ~ 22321733 (-)
LOC117598862 NA other downstream 386279 22319544 ~ 22320275 (-)
cltb cltb,LOC107750349,LOC107677378 other upstream 39784 22769637 ~ 22779068 (-)
G215624 LOC108277208 other upstream 405066 23134919 ~ 23156666 (-)
fam193b fam193b,LOC107579325 other upstream 583033 23312886 ~ 23327942 (-)
LOC113546965 dgkq,LOC107595737,LOC107749781,LOC107587098 other upstream 626300 23356153 ~ 23389259 (-)
usp7 usp7 other upstream 1810919 24540772 ~ 24588450 (-)

Expression


Co-expression Network