clec16a (clec16a)


Basic Information

Item Value
gene id clec16a
gene name clec16a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24923500 ~ 24995766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309818.1
GGAGCTCAGCCTCTCTTGTCACTGTCCTAGCTAACGTTAGCGATGTTTTCTCATTCACTACAGCAGTAATGGATTATTTTAGTCGAGtggagtaaaataaaataaagtgacaCAATAAGAGAAACCTGCCACCATGTTTGGCCGGTCCAGGGGCTGGGTTGGAGGGCAGGGGAAGTCCAAAAACATCCACTCTTTGGATCATTTGAAGTACATGTATCACGTCCTGACCAAGAACACGACGGTGACGGATCACAACCGGAACCTGCTCGTCGAGACGATTCGCTCCATCACGGAAATCCTCATTTGGGGCGATCAGAATGACAGCTCGGTCTTCGACTTCTTTTTGGAGAAGAACATGTTTGCGTTTTTCCTGAACATCCTGCGGCAGAAGTCGGGACGCTACGTCTGCGTGCAGCTCCTGCAGACGCTCAACATCCTGTTCGAGAACATAAGCCACGAGACGTCTCTCTATTACTTATTGTCGAATAACCACGTCAACTCCATCATCGTGCATAAATTTGACTTCTCCGATGAAGAGATCATGGCCTACTACATCTCCTTTCTCAAGACGCTGTCGCTGAAACTCAACAATCACACCGTGCACTTCTTTTACAACGAGGTAAGGCTCCGGGGAAAGTTATTGGTGTACTGTAAATGGTTGCACGCGTTATTTTCGCTTTATGGCTTATTAAGGAATGTTGACGCGGCTGCTGTTGAGATCAGAGATACACCTCAGGATCGGTTATTTTCACCTGAGTGTGCTAACATCTCCTCATGCTCCGCAGTGGACAACCAGCACATGCTGCACTACATCCGGGATAAAACAGCCGTGCCGTACTTCTCCAACCTGGTGTGGTTCATCGGCAGCCACGTCATCGAGCTGGACAAGTGTGTGCAGACGGACGAAGAGCATAAGAACAGAGGGAAGCTGAGCGACCTGGTGGCGGAGCACCTGGATCACCTGCACTACCTGAACGACATCCTCATCATCAACTGCGAGTTCCTGAACGACGTTCTGACCGATCACCTGCTGAACCGCCTCTTCCTGCCGCTCTACGTCTACTCGCTGGTCACCCAGGAGCAGagtgAAGATCGCAAGATCAACCCTCAGGTGTCCCTCTACCTGCTCTCCCAGGTGTTCCTTATCATACACTACCAGCCGCTGGTGAACGCTCTGGCAGACGTTATACTGAACGGAGACCTGACTGTGTTTACAACCCAGAcagagcagaacacacacaagagctcaTCCAACGCCGGAGTGCGACGCTTCACCAAGCCGCCGGAGAGTCTGGAGCGCTCGTTGGAGATGAGCCGGCATCGAGGCAGGAAGAAGACGCAGAAGCGGCCCAACTACAAGAACGTAGgcgaggaggacgaggaggagaggGGAGCCGAGGAAGGCGCGGACGAGGAGAAGGCTAAAGGTACAGAGGCTAGCTCAAAGGCCAGCAGGACGAGTGGGGACACGGAAGagattGAGATGGTGGTGATGGAGAAGTGTAAGATCTCAGACGTGTCCACGCTCACGGAGCAGAACATCACGGACGAGGAGAAAACCGCCGCGGCCGCTGCAGGAGCGGAGGGACAGAAGAGCAGgccCTTCCTGGACATGGTGTATAACGCTCTGGACTGTGAGAAGGAGGATTATCACGCCCTCTTCGTCCTCTGCCTCCTCTTCGCCATGTCTCACAGcaaagGTATAAACCCAGAGTTGCTGGAGAAGATCCAGCTGCCGGTTCCAGGTCAGGAGAGAAGCAGCTACAGTCATGTTCTGGTGGAGAGACTGATCAGAGTCATGAACCACGCTGCTCtgccagACGGGAGGGTGCGCTTGGCCACTCTGGAGCTGAGCTGTCTTCTCCTGAAGCAGTCGGTGCTGTCCGGGGCTCGGTGCATCATCAAGGACGTCCATCTGGCCTGTCTGGAGGGTGCAAGAGAAGAGAGTCTTCATCTTCTACGGCGATTTTACaagGGAGAGGAGATCTTTCTGGATATGTTTGAAGACGAGTACAGGAGCATGACAagcaaGCCTCTAAATGTGGAGTATCTCATGATGGATGCGTCCATACTCCTGCCCCCTACTGGAACGCCGCTGACCGGCATCGACTTTGTGAAACGGCTTCCGTGCGGCGACGTGGAGAAAACACGCAGAGCCATCCGCGTGTTCTTCATGTTGCGGGCTCTGTCCCTGCAGCTGCAAGGGGAACCCGAGACACAGCTGCCCCTGACGCGCCCCGAAGACCTCATCAAGACCGACGACGTCCTCGACCTCAATAACAGTGACCTCATCGCCTGCATGGTGGTGAGTAAAGACGGCGTTCAGGCGCAGAGGTTCCTGGCTGTGGACGTCTATCAGATGAGTCTGGTGGAACCCGAGACCAAGCGCCTGGGCTGGGGGGTCGTCAAGTTCGCAGGTCTTCTGCAGGACATGCAGGTGTCGGGGGTGGAGGACGACAGCAGAGCCCTGAACATCACCATCCACAAACCGACCTCCAACCCTCACGCCAAACCCGTCCCCATCCTGCAGGCCTCCTTCATCTTCGCCGATCACATTCGCTGCATCATCGCCAAGCAGCGGCTGGCTAAAGGGCGCATCCAGGCCCGGAGGATGAAGATGCAGAGGATAGCGGCTCTCCTCGATCTTCCCGTACAGCCTTCATCCGAAGTGCTAGGCTTCGGCCagtcctcttcctcatcctcttcctcatcctcgtcCTCGTCTCAGCTGCCTTTCCGCTTCTACGACCAGGCTCGGCGAGGCCCAGCTTTCGCCTCCGTAGATAAAGTTCCAGgtttcgCAGTGGCCCATGTGGCCCAGCAGCGCAGTTCCTCCCCGAGTTCCAGCTCCAGCTTCACGGCTCACTCCGACTCCGACACCATCAGCGGtgtgtctacacacacacacagcatgtcagGTCTGGAAGCGAGGGCCGGAGGTGTACGTTTTCTCTCCCGGACGATGCCGGAGAGTGGGTTTAGACCTCCACATCCAGCGCCGGCCGCACCCCTGGCGCCGAGCCTGACCCCCGCCGCCCAGCCCACCATCTCCCTGCTGTCAGACACCAACACCGACTCACTCAGCGTCGACTCGCTCACCCTGCTGCCTCCAGCCGACCCACCCTGCCTGCGTCACTTCACCCGGGATGACGCCGCGCCCGCTGACCCCGACACCCGTACGACACCCAACCCAGAGACCGCAGAGGACAGAAAGGACACAGAAGAGCACGGGTCTTATCCCAATCCCGATTCAGGAGAGATCAGGAAAGACGATGGACCTCATCCCGATTCTGAACCAGCAAAAGTTTCTGAACCCGATGTAACCTCAAGGTCAAGAGAGAAGATCGAGACTGAAATTCCTGCTCCAGACCCTGAGGAAAACCTGGAACTGGAGCAGGAGACGGAGATAGACTGagacactttttcttttcttttttctttttgtttgttgagGAACCAGCTGAAACCTGAACGTCAGATTGGTTGCATTCTGGTTTCTGTTTGTTCATCGCAGCGGTGGCTTTTGTCATGTTCCGCGCCTCTTCTTTGTTTAAGAACATTCTTGAATGCAACATTTTTTCTTCTACAACAGTAGGGTTATTGATCGTCTCTTTCAAAGCACATCTTTGTTTTTGGTCAAAGcgctattgttttttttttctctctctctctgctatgGTGCTGTGTGCATGAGTGAGTTCTGAGTTATGCCTGCATGAGTGATTGAGTGGGATTattcatgatgtgtgtgttgtgtgattgaTTGTGTGACTGATCTGAGAAAGGATGAGGAGGCGGATGAAGAGGAGAGtgggtttgtttttataaatacgTGGGTGAGGGAATGCCCGCTTGGTTTTACCAGTCTTAACACTGAGGAATGTACCATGAGCTCTGGGTCTGTCCAGCGGTGCTCTCTCCTGGACGACTCTCTCACTTTGACTGAACACACATTTGCACTTCAAGAAgcagcaaattattattattattttttttttttttgga

Function

symbol description
clec16a Predicted to be involved in endosomal transport; endosome to lysosome transport; and regulation of autophagosome maturation. Predicted to be active in endolysosome membrane. Predicted to be integral component of membrane. Predicted to colocalize with late endosome. Human ortholog(s) of this gene implicated in Addison's disease; multiple sclerosis; rheumatoid arthritis; and type 1 diabetes mellitus. Orthologous to human CLEC16A (C-type lectin domain containing 16A).

NR:

description
PREDICTED: protein CLEC16A isoform X1

GO: NA

KEGG:

id description
K19513 CLEC16A; protein CLEC16A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309818.1 True 4005 mRNA 0.54 24 24923500 24995766

Neighbor

gene id symbol gene type direction distance location
ciita ciita coding upstream 2745 24899421 ~ 24920755 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding upstream 27305 24867400 ~ 24896195 (+)
atf7ip2 atf7ip2 coding upstream 94027 24811080 ~ 24829473 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding upstream 348039 24569233 ~ 24575461 (+)
abat abat,LOC107690246,LOC107738621,LOC106592407 coding upstream 504954 24385737 ~ 24418546 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576 coding downstream 25503 25021269 ~ 25033735 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575 coding downstream 40158 25035924 ~ 25053158 (+)
xylt1 xylt1,LOC107590574,LOC107729195,LOC107686990,LOC107567884,LOC107733871,LOC107690267 coding downstream 159770 25155536 ~ 25221273 (+)
rpl14 rpl14,LOC107710319,LOC107688416,LOC107654689,LOC107706260 coding downstream 193085 25188851 ~ 25691424 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding downstream 273098 25268864 ~ 25278367 (+)
G216577 NA non-coding upstream 10695 24870118 ~ 24912805 (+)
LOC117599007 NA non-coding upstream 69207 24829543 ~ 24854293 (+)
G216488 grin2a,LOC107685916,LOC107690256,LOC107568390,LOC108413991 non-coding upstream 183845 24738961 ~ 24739655 (+)
G216467 NA non-coding upstream 216621 24706620 ~ 24706879 (+)
G216463 grin2a,LOC107733867,LOC102780805 non-coding upstream 228076 24695102 ~ 24695424 (+)
G216652 NA non-coding downstream 29318 25025084 ~ 25025573 (+)
G216631 NA non-coding downstream 48613 25044379 ~ 25054895 (+)
G216668 NA non-coding downstream 160495 25156261 ~ 25157543 (+)
G216674 NA non-coding downstream 161914 25157680 ~ 25185402 (+)
G216675 NA non-coding downstream 170734 25166500 ~ 25189043 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 125822 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 384383 24529679 ~ 24539117 (+)
G216197 NA other upstream 465496 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 593500 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1003097 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1261605 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1309680 26305446 ~ 26306768 (+)

Expression


Co-expression Network