lin7b (lin7b,LOC107730776)


Basic Information

Item Value
gene id lin7b
gene name lin7b,LOC107730776
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3882128 ~ 3888471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309839.1
TCTCCCACAACCGTCCACTCAGCAGCTGGTGGTGTAGGACGGAAATGTCGGTTGACTAACGGATCTTAAACTAGCTgtgataacaacaacaacaacaacaacagatacACGTTCTTGGTTATTTCGTAAcgggagagaggagaaaaaacaacaacaacaacaacaacaacaacagcaacaacaaacgGCTCCGGTTTACGCCGCAGCGCGAGAGAAGAAGATCTGCTCCACTAATGATGTCATCGTATTATCATCCGGGGAAGGAGGCGGACATGGCGGAGCCGCTGTGCCTGGAGAGAGATGTATGCAGGGTAATTGAGTTGCTGGACCGGCTGCAGAGGAGCGGCGAGCTGCCTCCCCCCAAACTGCAGGCGCTGCAGAGGGTGCTTCAGAGCAAATTCTGTGCTGCCATCAGAGAGGTGTACGAACAGCTCTATGACACGCTGGATATCGTGGGTGGACCCGAGGTGCGAGCTCAGGCCACTGCTAAAGCGACAGTAGCTGCGTTTGCGGCGAGCGAAGGCCACGCCCACCCGCGTGTTGTGGAGCTTCCCAAGACTGACGAAGGGCTGGGCTTCAACATCATGGGGGGAAAGGAGCAGAACTCACCCATCTACATCTCCAGGGTGATTCCAGGGGGCGTGGCCGACCGACAGGGCGGATTGAAGAGGGGCGACCAGCTGCTTTCTGTCAACGGAGTGagCGTGGAGGGTGAGCATCATGAGAAGGCCGTGGAGCTGCTGAAGGCGGCGCAGGGTTCAGTGAAGCTGGTGGTGCGCTACACCCCAAAGGTCCTGGAGGAGATGGAGGCCCGGTTCGAGAAGCTGCGCAGCGCCCGGCGACGCCAGCAACACACCAGCCACTCATCTTTAGAGTCTCGGGGTTAACCAATCCCAACCACCGGTTAACCTGTTGACCACTCCCATTCCTCAATCCTCCAATGGGAAGACAGAAGACTAGCAGTGCTGAGGAGATGAGCGAAGACTCGCTTTAGATACATGTATGTTAGTGGAACATTCCTGAAACAGTAGACCTCAAATATACTCTTTATGCCATCCATCTATAGGGAGAGACTGAACAGAGtatcaaatttaatttttttatttgtgtttgtgtgtgttttttgtgtgtgtgtgtaaaaaaaaaaaaaacactgttgtaTGTTCAGTAatgtaattaaagaaaaacagagaccaACTATAGCAAAGAGAGCATATTCACAGATCAGAAGCTTGCAGTCATGCTCCTCcaagggctgtgtgtgtgtgtgtgtatgtgtgaacaCTGTGGTTGTGTGACCCGTCTCTGTACATGACATTATGCTGCATTACAGGCATAGATGACCATTTTGAGGGTAAAAGCTCTTCCTGACCTCACACTGCTCCAACCTATACAGCTTTTCCTCGGCACTACATGCCCAAAGAGTTTGTCTTAATCCTCTGATGAAGTAACTCTGTGTctggatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggtggaAACATATTTAGTGCTTGCGTTACAAGTGGCTCTCTGTTGACAGTTTGTCAGACCCTGTGCGTTATACTGCTGTTCTGTGTGGAATTGAGCTGCTAGTCATGCCTGTTTACATTTTCGTGACctcttatttaatttatttattcattcattcctacAATAAAATCAGCAATGTTATTGAAAAGCCTCA

Function

symbol description
lin7b Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in brain; central nervous system; eye; and retinal inner nuclear layer. Orthologous to human LIN7B (lin-7 homolog B, crumbs cell polarity complex component).

NR:

description
protein lin-7 homolog B

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309839.1 True 1700 mRNA 0.49 6 3882128 3888471

Neighbor

gene id symbol gene type direction distance location
zgc:193811 LOC108259531 coding downstream 2248 3868579 ~ 3879880 (-)
LOC113528389 tlr-20a coding downstream 121140 3756985 ~ 3760988 (-)
prkar1aa prkar1a,LOC107654492,LOC107721504,LOC107708993,LOC108274040,LOC103038385,LOC107693667 coding downstream 198805 3672980 ~ 3683323 (-)
rac3a rac3,rac3a,rac3b,LOC106610298,LOC108436959,LOC100712409 coding downstream 212826 3658456 ~ 3669302 (-)
gps1 gps1,LOC107654488,LOC107721507,LOC107688111 coding downstream 224841 3641541 ~ 3657287 (-)
snrnp70 snrnp70 coding upstream 2703 3891174 ~ 3901444 (-)
pex11a pex11a coding upstream 16316 3904787 ~ 3907427 (-)
strada strada,LOC107693497 coding upstream 29201 3917672 ~ 3932820 (-)
mylk5 LOC108256285 coding upstream 263588 4152059 ~ 4192591 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008,LOC107674136 coding upstream 322758 4211229 ~ 4213733 (-)
G205063 NA non-coding downstream 143169 3704283 ~ 3738959 (-)
G205040 dus1l,LOC102781131 non-coding downstream 250745 3630694 ~ 3631383 (-)
G205030 NA non-coding downstream 262009 3617171 ~ 3620119 (-)
G205038 NA non-coding downstream 279889 3601002 ~ 3602239 (-)
G204664 NA non-coding downstream 707851 3171262 ~ 3174277 (-)
G205145 NA non-coding upstream 60378 3948849 ~ 3957710 (-)
LOC117598833 NA non-coding upstream 101935 3990406 ~ 3990917 (-)
G205169 gfap,LOC107658466,LOC107729544 non-coding upstream 145425 4033896 ~ 4035077 (-)
G205165 NA non-coding upstream 213885 4102356 ~ 4104225 (-)
G205155 NA non-coding upstream 240670 4129141 ~ 4131967 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other downstream 16279 3768855 ~ 3865849 (-)
nde1 nde1 other downstream 468361 3382831 ~ 3413767 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 804110 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 842476 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 1344017 2433149 ~ 2538111 (-)
G205173 gfap,LOC103392664 other upstream 152010 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 204442 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 833946 4722417 ~ 4734902 (-)
G205633 rps11,LOC102786880,LOC107674708 other upstream 1200865 5089336 ~ 5091922 (-)
G206236 NA other upstream 1866296 5754767 ~ 5756733 (-)

Expression


Co-expression Network