LOC117598820 (LOC108280985,LOC108277545)


Basic Information

Item Value
gene id LOC117598820
gene name LOC108280985,LOC108277545
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21454118 ~ 21480442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309840.1
TATTGTATTTGCTCATCACTCACGACCAAGATCTCTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAAGATCATAGACATGACATCTACCTCTCATTTAATTATAAGTTATAGAAAAATCCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTTGttaatgagagtaaaactatgATACTAACCAGTGCAGAGAGGAATGACTCTGGAACATACACTTTAGTCACCTTTGATGCAAACGGGAATCTTAAAGGCAATTATACTCTCCAGCTAAACACTGAAGCTGAGGTGTCCTCAGTGAAATTGTGGTACAGCTGCTTGTCCCCTGAAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCAACTGGACTTCTGATTTAATCACACTCCCTCAACTGGAGAACGGGAACAGCGCTCTCACACTGAATAAAGATCATCATGGAAAAGTCACCTGCCGTGTAGAAAATCATGTCAGCTATAACTACAATACCACTGAACTCCACCCATGTCCTGgTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCATGGAGGATGGGTTAGACCTAAAGATCATAGACAAGACATCTACCTATCGTTTAATTATAAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATCTCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAGCGACTCTGGAACATACACTTTAAGGACGTTTGATGCAAACGGGAATCCTAAAGACAATTATACTCTCCAGCTAAACATTGAGGCTGAGGTGTCCTCAGTGAAATTGTTGTACAGCTGCTTGTCCCCTGAAGTCATGAAAGTGTACTGTTCTGCTGATGGAGACAACCTCCGCTTCAACTGGACTTCTGATTTAATCACACTCCCTCAACTGGAGAATGGGAACAGCACTCTCATACTGAAGAAAGATCATCATGGAAGTGTTACCTGCCATGTAGAAAATCATGTCAGCTATAACTACAATACCATTGAACTCCACCCATGTCCTGaatctACAACTTCAGCATCATCTCTTGCACAGTTTACTAATGGCAAAGTTCCTGCTGATGGACCTACTACTGCAGTAGTCACTTCCACACTGTCTAATGATGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGCTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAACATCATAGACAAGACATCTACCTCTCGTTTAATTATAAGATATAGAAAAATCCAGAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTTGttaatgagagtaaaactatgATACTAACCAGTGCAGAGAGGAGCGACGCTGGAACATACACTCTAAGCACGTTTGATGCAAACGGGAATTCTAGAGCCAATTATATTCTCCAGCTAAACATTGAAGCCGCGGTGTCCTCAGTGAAAGTGTGGTACGGCTGTTTGTCTTTTGATGTCACTAAAGCACACTGTTCTGCTGATGGAGACAACCTCCGCTTCACCTGGACTGCTGATTTAAACACAATCACTCAGCTGGAGGATGCAAACAGCACCTTGCTGCTGGATCAAAACCATCATGGAAACATCACCTGCCATGTAGAAAACCATGTCAGCCGTGTCCGTAACACCATTGAACTCCACCCATGTCCCGgtttcatggtgtttgtgtctgtgtggctcTGTGAATTCATCATCCTTCTGTCACTGTTATTGGGAGCGTTTTATATCTACACCAGAATCTacaggaaacagaaaataaCTGAGAATCAGGAAGCTCTGTAAACCTAGATTAGGAACAGAAGAAGCAGTCCACGATTGCTCTCCTCCATGCCAGCAATCCATCCACGGTGAACCAGCAGAAATGTATAAGCATAAATAACAGATGGGTAACatagaaaacaaattttattcCTCAATCCACGTCTTCTTTTCAAAAACTAAACCAGCCTCATGATTCCTTGATGAACCAAGTGCTACTTTTTAGAGTTGTTTCTctttagctttattttttaatattctaaaatattGCAATGCTTAAATGCTGCTGTTCCAATCATGCTTTTGTAGAAATCATTTTTGTAGActcttttataaatataaatctaagtTTATGTGTGGAGGTTGAAAAATGTCTGTTCTGAGCTGTTGCTTTTTGTTTcctgaaaaaaaacttttgaacagaatggagatgtgtacatttttcttatcttgcctaaatatcatattttttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309840.1 True 2546 mRNA 0.41 11 21454118 21480442

Neighbor

gene id symbol gene type direction distance location
LOC117598821 NA coding upstream 23660 21405340 ~ 21430458 (+)
LOC113527856 NA coding upstream 51394 21390903 ~ 21402724 (+)
LOC113527892 NA coding upstream 67031 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 125364 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 160324 21288480 ~ 21293794 (+)
LOC113540583 NA coding downstream 61548 21541990 ~ 21546092 (+)
rest rest coding downstream 140189 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 165410 21645852 ~ 21646623 (+)
LOC117598748 NA coding downstream 166794 21647236 ~ 21647803 (+)
LOC117598992 NA coding downstream 178060 21658502 ~ 21659107 (+)
G214802 NA non-coding upstream 5714 21426974 ~ 21448404 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding upstream 37605 21414462 ~ 21416513 (+)
G214798 NA non-coding upstream 85890 21368024 ~ 21368228 (+)
LOC117598756 NA non-coding upstream 95059 21356850 ~ 21359059 (+)
G214753 NA non-coding upstream 209333 21198542 ~ 21244785 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding downstream 21695 21502137 ~ 21505786 (+)
G214747 LOC108280967 non-coding downstream 71107 21551549 ~ 21556401 (+)
G214825 NA non-coding downstream 136653 21617095 ~ 21617294 (+)
G214829 NA non-coding downstream 154409 21634851 ~ 21635074 (+)
G215042 NA non-coding downstream 175819 21656261 ~ 21656835 (+)
hopx hopx other upstream 105032 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 430031 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1280766 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1472738 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1500832 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 1580 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 34131 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 165638 21646080 ~ 21649152 (+)
G215022 NA other downstream 182642 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 184116 21664558 ~ 21711769 (+)

Expression


Co-expression Network