LOC113527892


Basic Information

Item Value
gene id LOC113527892
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21381780 ~ 21387087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309848.1
CTCATGACCAAGatcaagacagaaagagagagaggaggacagTTCTCTAAACGAAATGAGAATACATGTCATCTTTGGTATCCTTTTGATTTTCACAGGAACTGTCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTAATCAGCGTaatcagtgttgtgtagctctgGGACAACGACTGCACTTGCAAATGGTCATGGAGGATGGGTTGGTCTTAAATAAGAACAACGGGACATTTGACAAGGCTGTCATTTTGAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATTCCCCAAAATGGCAGTatgttaatgataataaaactataatacTAATAACCATTGCAGAGAGGAGTGACTCTGGAACATACACTTTAGACATCTTTGATgcaaaggggaataaaaaaGACAATTATACTCTCCAGCTAAACACTGAAGCCACGGTGTCCTCAGTGAAAGTGACATACAGCTGCTTGTCTCCTGAGCTCAGAAAAGTGTGTTGTTCTGCTGATGGAGACAACCTACGCTTTCACTGGAACTCTGATTTAATCAAACTCACTCAACTGGAGGACGAGAACAGTGCTTTCCTGCTGGATAAAAACAATCATGGAAATGTTAGCTGCCACGTAAAAAATCATGTCAGCCATGACCATAACACCATTGCTGTCCACCCATGTCCCATGACCATTTGCACACAGTCTAATAATGgtttcatggtgtttctgtctgtgtggctATTTGAAGTCATCATCCTGGTGTCTTTGTTTGTGGGAGCATTTTACATCTACACCAGAACCTACACATCAACTGAGAATCCAGGACCAGGAAGCTCTGTAAACCTGAATTAGGAATTGAAGAAGCAGTCCATGGTTGCTCTTCTCCATGGTAGCAATCATCACTCTCCATCCCATCCAGCCTTTTTCAAGAAACAAATTCAGCCTCATCAATCCTgcagattccttcattaattgaGTACTACTTTTAGAGTTATTTCTGTTCAGATTTGTTTCTAATATTCTGTCAGGTCAACTTTGTCT
>XM_034309849.1
CTCATGACCAAGatcaagacagaaagagagagaggaggacagTTCTCTAAACGAAATGAGAATACATGTCATCTTTGGTATCCTTTTGATTTTCACAGGAACTGTCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTAATCAGCGTaatcagtgttgtgtagctctgGGACAACGACTGCACTTGCAAATGGTCATGGAGGATGGGTTGGTCTTAAATAAGAACAACGGGACATTTGACAAGGCTGTCATTTTGAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATTCCCCAAAATGGCAGTatgttaatgataataaaactataatacTAATAACCATTGCAGAGAGGAGTGACTCTGGAACATACACTTTAGACATCTTTGATgcaaaggggaataaaaaaGACAATTATACTCTCCAGCTAAACACTGAAGCCACGGTGTCCTCAGTGAAAGTGACATACAGCTGCTTGTCTCCTGAGCTCAGAAAAGTGTGTTGTTCTGCTGATGGAGACAACCTACGCTTTCACTGGAACTCTGATTTAATCAAACTCACTCAACTGGAGGACGAGAACAGTGCTTTCCTGCTGGATAAAAACAATCATGGAAATGTTAGCTGCCACGTAAAAAATCATGTCAGCCATGACCATAACACCATTGCTGTCCACCCATGTCCCAgtttcatggtgtttctgtctgtgtggctATTTGAAGTCATCATCCTGGTGTCTTTGTTTGTGGGAGCATTTTACATCTACACCAGAACCTACACATCAACTGAGAATCCAGGACCAGGAAGCTCTGTAAACCTGAATTAGGAATTGAAGAAGCAGTCCATGGTTGCTCTTCTCCATGGTAGCAATCATCACTCTCCATCCCATCCAGCCTTTTTCAAGAAACAAATTCAGCCTCATCAATCCTgcagattccttcattaattgaGTACTACTTTTAGAGTTATTTCTGTTCAGATTTGTTTCTAATATTCTGTCAGGTCAACTTTGTCT

Function

GO:

id name namespace
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0097696 receptor signaling pathway via STAT biological_process

KEGG:

id description
ko04668 TNF signaling pathway
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309848.1 True 1048 mRNA 0.41 6 21381780 21387087
XM_034309849.1 False 1021 mRNA 0.41 5 21381780 21387087

Neighbor

gene id symbol gene type direction distance location
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 53026 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 87986 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 154932 21206459 ~ 21226848 (+)
tlr1 LOC108258270 coding upstream 196930 21181413 ~ 21184850 (+)
LOC113528291 LOC108261075,LOC108434533 coding upstream 299766 21047261 ~ 21082014 (+)
LOC113527856 NA coding downstream 3816 21390903 ~ 21402724 (+)
LOC117598821 NA coding downstream 18253 21405340 ~ 21430458 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 67031 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 154903 21541990 ~ 21546092 (+)
rest rest coding downstream 233544 21620631 ~ 21631906 (+)
G214798 NA non-coding upstream 13552 21368024 ~ 21368228 (+)
LOC117598756 NA non-coding upstream 22721 21356850 ~ 21359059 (+)
G214753 NA non-coding upstream 136995 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 195477 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 218476 21162900 ~ 21163304 (+)
G214800 NA non-coding downstream 19286 21406373 ~ 21464629 (+)
LOC117598826 LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967 non-coding downstream 27375 21414462 ~ 21416513 (+)
G214802 NA non-coding downstream 39887 21426974 ~ 21448404 (+)
G214804 NA non-coding downstream 60906 21447993 ~ 21466726 (+)
G214807 NA non-coding downstream 87546 21474633 ~ 21474963 (+)
hopx hopx other upstream 32694 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 357693 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1208428 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1400400 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1428494 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 94935 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 127486 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 258993 21646080 ~ 21649152 (+)
G215022 NA other downstream 275997 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 277471 21664558 ~ 21711769 (+)

Expression


Co-expression Network