adsl (adsl)


Basic Information

Item Value
gene id adsl
gene name adsl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9380674 ~ 9391360 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309942.1
cTACCTGGCCAAGGCAGAGAAGGATCTGGGGCTGTCCATCACTGATGCTCAGGTGAGTGAGATGGAGGCTCACGTGGAGGACATCGACTTTGCCATGGCAGCTGAGGAGGAGCGCAAGCTTCGGCATGATGTCATGGCCCACGTCCACACCTTCGCCCACTGCTGCCCCACTGCAGCTCCCATCATCCACCTGGGTGCTACCTCCTGTTACGTGGGAGACAACACAGACCTGATTATGCTCCGTGATGGATTCGACATCCTGCTGCCCAAGCTGGCCCGTGTTATTGACAGATTGGCTAACTTTGCAGAAAAATATGCTGACTTGCCAACTCTGGGCTTCACCCACTACCAgcCAGCTCAGTTGACTACAGTGGGCAAGCGAGCGTGTTTGTGGTTGCAGGATCTGGTCATGGACATGCGCAACCTTCAGAGAGCTCGAGATGATCTGCGTTTCCGAGGGGTGAAAGGTACCACGGGGACCCAAGCCAGCTTCCTGCAGCTCTTCCAGGGGGATCATGATAAGGTGGAGGCACTGGATAGAATGGTGACTGAGCTGGCTGGATTTAAAAAGTCATATATAGTGACGGGACAAACATACAGCCGTAAAGTAGACATTGACTCTCTGACTGTGCTGGCTAGCCTGGGAGCCACTGTACACAAGATTTGTACTGATATCCGTCTGCTGGCTAACCTGAAAGAGATTGAAGAACCATTTGAGAAAGAGCAGATAGGTTCAAGCGCTATGCCATACAAGAGGAACCCGATGCGTGCAGAGCGCTGCTGTAGTCTGGCTCGTCACCTGGTGGCGCTGGTGTCTAATCCTCTCCAGACTGCCTCAGTACAGTGGCTGGAAAGAACTCTGGATGACAGCGCAAACAGgagaaTCTCTCTGCCCGAGTCCTTCCTCACAGCTGACATCATCCTCAGCACTCTACAGAATGTCACTGAGGGTCTGGTGGTCTATCCTAagGTGATCGAGAGGCACATCCGCCACGAGCTGCCCTTTATGGCCACTGAGAACATCATCATGGCCATGGTGAAGGCAGGAGGGAACAGGCAGGATTGCCATGAGAAGATCCGGGTTTTGTCTCAGAAGGCGGCAGCTGTGgtgaaggaggaaggaggagatAATGACTTCCTGGCTCGAGTGCAGGCTGACCCCTACTTCGCTCCTATACTTGACCAGCTAGATGCCCTACTGGACCCTAAAACCTTCATTGGCCGAGCCCCACAACAGGTTGCCAGATTTCTCTCTGAAGAGGTTAAACCTGTCCTTCAGCCCTATAAGAGCCAGATGGACGTGAAGATTGAACTGGAGCtctgaggcacacacacacaatccttgTAAGCCTGCCACCAAGTCTGCAAAACAGTGTTTTGACTTCAGCCTTTTGTCATTTGCTGAACAAAATTTTTCTAATGTGTCATGTCATTATGATGCTGCTTTACAACATGTTACAGAAACAGTGACACTGTGCAAGATAATCAAGGCTCAGTCGTGTAAcccaagttttttcttttcagtattattcagtatatttcagtatttgttgccatgagaagaaaaaataaatccatttcaaaacaacaa
>XM_034309943.1
AACAAGTGCATATAGAGGAGCAGGAAGAAGAAGCAGAGGACCCAGAGCTCGTGGCGTGTATGAGAGGAAAAGTGCTGCAGGACAGGATTCGCAATGGCCGGAGTTGGGGAAGAGTTCATGAAGTACCGCTCTCCTCTGGTGTCTCGGTACGCCAGCAAGGAAATGGCTTTTAACTTCAGTGACTTGGAGAAAGCTGTGGacacacacacacagtggatcTACCTGGCCAAGGCAGAGAAGGATCTGGGGCTGTCCATCACTGATGCTCAGGTGAGTGAGATGGAGGCTCACGTGGAGGACATCGACTTTGCCATGGCAGCTGAGGAGGAGCGCAAGCTTCGGCATGATGTCATGGCCCACGTCCACACCTTCGCCCACTGCTGCCCCACTGCAGCTCCCATCATCCACCTGGGTGCTACCTCCTGTTACGTGGGAGACAACACAGACCTGATTATGCTCCGTGATGGATTCGACATCCTGCTGCCCAAGCTGGCCCGTGTTATTGACAGATTGGCTAACTTTGCAGAAAAATATGCTGACTTGCCAACTCTGGGCTTCACCCACTACCAgcCAGCTCAGTTGACTACAGTGGGCAAGCGAGCGTGTTTGTGGTTGCAGGATCTGGTCATGGACATGCGCAACCTTCAGAGAGCTCGAGATGATCTGCGTTTCCGAGGGGTGAAAGGTACCACGGGGACCCAAGCCAGCTTCCTGCAGCTCTTCCAGGGGGATCATGATAAGGTGGAGGCACTGGATAGAATGGTGACTGAGCTGGCTGGATTTAAAAAGTCATATATAGTGACGGGACAAACATACAGCCGTAAAGTAGACATTGACTCTCTGACTGTGCTGGCTAGCCTGGGAGCCACTGTACACAAGATTTGTACTGATATCCGTCTGCTGGCTAACCTGAAAGAGATTGAAGAACCATTTGAGAAAGAGCAGATAGGTTCAAGCGCTATGCCATACAAGAGGAACCCGATGCGTGCAGAGCGCTGCTGTAGTCTGGCTCGTCACCTGGTGGCGCTGGTGTCTAATCCTCTCCAGACTGCCTCAGTACAGTGGCTGGAAAGAACTCTGGATGACAGCGCAAACAGgagaaTCTCTCTGCCCGAGTCCTTCCTCACAGCTGACATCATCCTCAGCACTCTACAGAATGTCACTGAGGGTCTGGTGGTCTATCCTAagGTGATCGAGAGGCACATCCGCCACGAGCTGCCCTTTATGGCCACTGAGAACATCATCATGGCCATGGTGAAGGCAGGAGGGAACAGGCAGGATTGCCATGAGAAGATCCGGGTTTTGTCTCAGAAGGCGGCAGCTGTGgtgaaggaggaaggaggagatAATGACTTCCTGGCTCGAGTGCAGGCTGACCCCTACTTCGCTCCTATACTTGACCAGCTAGATGCCCTACTGGACCCTAAAACCTTCATTGGCCGAGCCCCACAACAGGTTGCCAGATTTCTCTCTGAAGAGGTTAAACCTGTCCTTCAGCCCTATAAGAGCCAGATGGACGTGAAGATTGAACTGGAGCtctgaggcacacacacacaatccttgTAAGCCTGCCACCAAGTCTGCAAAACAGTGTTTTGACTTCAGCCTTTTGTCATTTGCTGAACAAAATTTTTCTAATGTGTCATGTCATTATGATGCTGCTTTACAACATGTTACAGAAACAGTGACACTGTGCAAGATAATCAAGGCTCAGTCGTGTAAcccaagttttttcttttcagtattattcagtatatttcagtatttgttgccatgagaagaaaaaataaatccatttcaaaacaacaa

Function

symbol description
adsl Predicted to enable (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity and N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity. Predicted to be involved in 'de novo' AMP biosynthetic process. Predicted to act upstream of or within purine ribonucleotide biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in adenylosuccinase lyase deficiency. Orthologous to human ADSL (adenylosuccinate lyase).

NR:

description
PREDICTED: adenylosuccinate lyase

GO:

id name namespace
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity molecular_function

KEGG:

id description
K01756 purB, ADSL; adenylosuccinate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309942.1 False 1591 mRNA 0.50 13 9380674 9390750
XM_034309943.1 True 1809 mRNA 0.50 14 9380674 9391360

Neighbor

gene id symbol gene type direction distance location
tmem150b tmem150b coding downstream 1078 9373152 ~ 9379596 (-)
pdgfbb LOC108260470 coding downstream 45044 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 94734 9247782 ~ 9285940 (-)
cbx6b LOC108274693,LOC108260787 coding downstream 149426 9208211 ~ 9231248 (-)
trnav-cac_10 NA coding downstream 193082 9187520 ~ 9187592 (-)
LOC113528600 LOC108258913 coding upstream 10325 9401685 ~ 9412610 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 98988 9490348 ~ 9501580 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 263083 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 278249 9669609 ~ 9673077 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 284402 9675762 ~ 9722637 (-)
G208189 NA non-coding downstream 277548 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 317167 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 349696 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 355691 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 373415 9007000 ~ 9007259 (-)
LOC117598997 NA non-coding upstream 50626 9441986 ~ 9446104 (-)
G208391 NA non-coding upstream 103263 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 355136 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 438267 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 445890 9837250 ~ 9838412 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 177034 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 237803 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 667356 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 1090866 8279767 ~ 8289808 (-)
prr15la LOC108273894,LOC108412372 other upstream 18444 9409804 ~ 9419584 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 72971 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 338491 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 1059364 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2250797 11642157 ~ 11647997 (-)

Expression


Co-expression Network