prmt1 (prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737)


Basic Information

Item Value
gene id prmt1
gene name prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 286041 ~ 292612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309956.1
GGCGGCGGGCCAATCAGAGCGCGGCAGTGCAGAGGCGGGAGGGAGAGGAGACGGGTTTATGTTGTGTGGGCGCGCGCGCTGAGGGACTGAAGCCATTCAGCAGCGAAATGGCGGAGACGGCGGACAGGATGGAGGTGTCGCAGGGAGAGAGCTCAGAGAAGCCCGCTGCTGAGGACATGACGTCCAAGGACTACTACTTCGACTCCTATGCTCACTTCGGCATCCATGAGgaGATGCTGAAGGATGAAGTGCGCACCCTCACCTACAGAAACTCCATGTTCCACAACAAGCACCTGTTCAAGGACAAGGTGGTGCTGGACGTAGGCAGCGGCACCGGCATCCTGTGTATGTTTGCAGCCAAGGCAGGGGCCAAGAAAGTCATCGGcATCGAGTGCAGCAGCATCTCCGACTACGCGGTGAAGATCGTCAAGGCCAACAAGCTGGATCAcaTTGTGACCATTATAAAGGGtaaggtggaggaggtggagctCCCAGTGGACCATGTAGACATCATCATCTCTGAGTGgatgggttactgtctgttctACGAGTCCATGCTCAACACGGTCATCTACGCCCGGGACAAGTGGCTGAAACCCGACGGGCTGATTTTCCCCGACAGAGCCACGCTGTACATCACCGCTATCGAGGACCGGCAGTACAAGGATTATAAAATCCACTGGTGGGAGAACGTGTACGGCTTTGACATGTCCTGCATTAAGGAGGTGGCCATTAAGGAGCCGCTGGTGGACGTGGTGGATCCCAAACAGCTCGTCACCAGCTCCTGCCTCATCAAGgaggtGGACATCTACACGGTGAAGATCGAGGACCTGTCCTTCACCTCGCCCTTCTGCCTGCAGGTGAAGAGGAACGACTACATCCACGCTCTGGTCACCTACTTCAACATCGAGTTCACACGCTGCCACAAGAGAACCGGCTTCTCCACCAGCCCGGAGTCTCCCTACACCCACTGGAAGCAGACTGTCTTTTACCTGGATGATTATCTGACTGTGAAGACGGGAGAGGAGATCTTCGGCACCATCAGCATGAAACCCAACGTCAAGAACAACGTAAGGCCTCATACTCCcagcgttgattattttcctgtaacagcatgtcctggagtgttttattcctcttataccacaacaatttactggctattaattattattatttttaacttgaGAATGACAcatactacttttttttttttttaaatccgcttatagtca
>XM_034309957.1
GCGGCGGGCCAATCAGAGCGCGGCAGTGCAGAGGCGGGAGGGAGAGGAGACGGGTTTATGTTGTGTGGGCGCGCGCGCTGAGGGACTGAAGCCATTCAGCAGCGAAATGGCGGAGACGGCGGACAGGATGGAGGTGTCGCAGGGAGAGAGCTCAGAGAAGCCCGCTGCTGAGGACATGACGTCCAAGGACTACTACTTCGACTCCTATGCTCACTTCGGCATCCATGAGgaGATGCTGAAGGATGAAGTGCGCACCCTCACCTACAGAAACTCCATGTTCCACAACAAGCACCTGTTCAAGGACAAGGTGGTGCTGGACGTAGGCAGCGGCACCGGCATCCTGTGTATGTTTGCAGCCAAGGCAGGGGCCAAGAAAGTCATCGGcATCGAGTGCAGCAGCATCTCCGACTACGCGGTGAAGATCGTCAAGGCCAACAAGCTGGATCAcaTTGTGACCATTATAAAGGGtaaggtggaggaggtggagctCCCAGTGGACCATGTAGACATCATCATCTCTGAGTGgatgggttactgtctgttctACGAGTCCATGCTCAACACGGTCATCTACGCCCGGGACAAGTGGCTGAAACCCGACGGGCTGATTTTCCCCGACAGAGCCACGCTGTACATCACCGCTATCGAGGACCGGCAGTACAAGGATTATAAAATCCACTGGTGGGAGAACGTGTACGGCTTTGACATGTCCTGCATTAAGGAGGTGGCCATTAAGGAGCCGCTGGTGGACGTGGTGGATCCCAAACAGCTCGTCACCAGCTCCTGCCTCATCAAGgaggtGGACATCTACACGGTGAAGATCGAGGACCTGTCCTTCACCTCGCCCTTCTGCCTGCAGGTGAAGAGGAACGACTACATCCACGCTCTGGTCACCTACTTCAACATCGAGTTCACACGCTGCCACAAGAGAACCGGCTTCTCCACCAGCCCGGAGTCTCCCTACACCCACTGGAAGCAGACTGTCTTTTACCTGGATGATTATCTGACTGTGAAGACGGGAGAGGAGATCTTCGGCACCATCAGCATGAAACCCAACGTCAAGAACAACctctgtgtgtgtgtccaagaCCTGGACTTCACTGGATGCATCGAAATCTCCTGTGGTCAGCTCTGTGAGATGTCCAAGACCTCGGAGTACAGGATGCGCTAaatctcctgtgtgtgtgtgtgtgtgtgtgtggtcattcCTTTTAGAGAGAGCCCTGGCGCTGATGATGATCCCTGAAGGACTTTTATACACTTACACACGGACACTTTGAGTTTCTATACAATGACGACGCAGCGGTGTTTTTATTGTGCAATATTCACACAGGATGCGTTTATTATTTTCCCCTTGTGCTGGAGTCATTCAGCCGGTAACAGGGTGTCtcgattctctctctctcacacacacacacacacacacacacacacacacacacacacacagatgcgcTGGCTCCCTCTCGCCTGTACATAGTGTTCATGTTCAGCCACTTTAACCTGTTGTGCAGTCATGGATCCTGTTGTCACGGCAACGCACCTGTCCCGTTTTGATTTCTAGTATTTAGTTGGGTAAGATGAAGAGCCTCCTGTGACGGTTTGGTTGCTCCTCTCCATCAGCGTGTGTCTGCGTGTTTGAGGGCAAATGCAAGTCGATCAttggtgtatttttgaaatTCCATTTACTAATCCTCCATCTTCTGTGTTTAAACAAGTGGCACGTCATGAATCCAGGCTGCAGTTCGGAGCCTGAGCCGggctctgtgattggctgaacgTGAAGCTGTGCTCGCGTCCTGTTCTCACTCTGCAGTGTGTCCGTGTGGTCACTAGGGGGCGCTCTAATAACGGTTCACtctctggttttattttgtgctgAAGTTCCACAGTCGGTTTTTAAAACTCACTTTGTTTTGTGTGAGGGGGAAAAACCCGAAGGTGCGGATTTCAGACTGGTCGCGTTTTAGTCGTTTCGCTGTTAGAAAACGAGCCTCGACTCTCCCAGCGCCTCCCGCGGGCACGCGAACACCGAGCTGCGTTCTGACCCGAATCGTCTGTGAAATAAAGTCTAACGCTGAGCTGTTTTCGGCGCGGACGTGTCGCGGTTTAACTCCGCTTCGTGTACGTCTGAGAAACGAGGTGTTTCTCCCCTCCTGAGCTCCGAGAATCAGTGTTAGAGAAACATAAAGAACTAAACTGGGCCTGACGTCTCCTTTAGGTTTAATATCTGTAGTGTTATTACGAGCGTAAACGAAGAACAGTGTCCGAGTGTGTTgaggttcagtgtgtgttcatcacTGCTCTGGGCTACAGCTGGCTAAAATTGTGTCCATTAGAAGTACATTCAATTTTTTCtgcgtttgtttgtt

Function

symbol description
prmt1 Enables arginine N-methyltransferase activity. Acts upstream of or within convergent extension involved in gastrulation and histone H4-R3 methylation. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; brain; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human PRMT1 (protein arginine methyltransferase 1).

NR:

description
PREDICTED: protein arginine N-methyltransferase 1 isoform X1

GO:

id name namespace
GO:0043985 histone H4-R3 methylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016273 arginine N-methyltransferase activity molecular_function

KEGG:

id description
K11434 PRMT1; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309956.1 False 1235 mRNA 0.53 9 288206 292612
XM_034309957.1 True 2372 mRNA 0.52 11 286041 292611

Neighbor

gene id symbol gene type direction distance location
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding downstream 35469 203871 ~ 250572 (-)
cpt1cb NA coding downstream 85649 144168 ~ 200392 (-)
LOC113525295 NA coding downstream 146203 116874 ~ 139838 (-)
tnnt1 tnnt1,LOC108427325,LOC108280528,LOC107583024 coding downstream 207077 65197 ~ 78964 (-)
LOC113525292 LOC100528069,LOC108274011,LOC108280241,LOC108427383 coding downstream 266205 18347 ~ 19836 (-)
si:ch211-195b15.7 LOC108280346 coding upstream 113314 405926 ~ 416575 (-)
rcn3 rcn3 coding upstream 214758 507370 ~ 516950 (-)
LOC113525013 NA coding upstream 318578 611190 ~ 614186 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding upstream 329733 622345 ~ 630711 (-)
si:ch73-248e21.7 NA coding upstream 343072 635684 ~ 639207 (-)
LOC113525022 NA non-coding downstream 26561 252070 ~ 259480 (-)
G203174 NA non-coding downstream 99020 184940 ~ 187021 (-)
G203164 NA non-coding downstream 106670 179034 ~ 179371 (-)
G203173 NA non-coding downstream 110049 175518 ~ 175992 (-)
G203169 NA non-coding downstream 125881 157878 ~ 160160 (-)
G203152 NA non-coding upstream 4781 297393 ~ 371373 (-)
G203158 NA non-coding upstream 9965 302577 ~ 341286 (-)
G203167 NA non-coding upstream 10579 303191 ~ 308928 (-)
G203189 NA non-coding upstream 28798 321410 ~ 322188 (-)
G203156 NA non-coding upstream 41089 333701 ~ 334660 (-)
G203170 NA other downstream 123457 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 182928 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 231766 26642 ~ 54275 (-)
G203154 NA other upstream 38929 331541 ~ 333644 (-)
G203254 NA other upstream 193610 486222 ~ 489731 (-)
LOC117598978 NA other upstream 447056 739668 ~ 750458 (-)
G203488 NA other upstream 448632 741244 ~ 750799 (-)
LOC117598979 NA other upstream 457451 750063 ~ 753822 (-)

Expression


Co-expression Network