tlk2 (tlk2,LOC108413572,LOC107689079,LOC107567040,LOC107660745,LOC107552467)


Basic Information

Item Value
gene id tlk2
gene name tlk2,LOC108413572,LOC107689079,LOC107567040,LOC107660745,LOC107552467
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8047426 ~ 8062595 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310023.1
TCATGATGGAGGAACTGCACAGCTTGGATCCTCGGAGGCAGGAGCTGCTCGAGGCTCGATTCACTGGGGTCGGAGTCGCCAAGGGTTCTGGGCACAACGAGTCATCCAATCATAGCCTGTGTAGCGTAGGCTCTCTGAGTGACAAAGAGCTTGAGacacctgaGAAGAAGCCGAATGACCAGAGAACACGTAAGAGGAAAGGAGACCCCTTTGACAGCCAAGCCAAAGCAGGAGGCCGAGGACACaaaatcagtgattattttgaGTTTGCGGGGGGTAGTGGTACTGGCACTAGTCCGGCGCGTGGTATTCCTCCTGTGGTGCGCTCCTCCCCGCAGCACTCTCTCTCCAACCCTCCTGCTGCAgtgcaGCAAGGAAGTCCGTCCTCTATCAATTCCAATACAGACCACTCCCACTCATCGTGCACCCTCAAaccagctttcacacacacgcagcacagGGCAACACAGTCGGACATGACTCTGGAGAAGCTGGCTGCGTTGGAGAGCAGTAAGAGTTCAGACCTCGAGAAAAAAGAGGGACGCATCGATGATTTGCTCAGGgTGAACTGTGACCTGCGCAGACAGATCGATGAGCAGCAGAGAATGTTGGAGCGCTGTAAGGAGCGCCTCAATAAGTGTGTTACTATGAGCAAGAAACTGCTCATTGAGAAGtcgaAGCAGGAGAAGATGGCGTGCAGGGACAAGAGCATGCAGGACCGTCTCCGACTGGGCCATTTCACTACAGTGCGACACGGCGCATCCTTCACGGAGCAATGGACCGACGGATATGCCTTTCAGAATTTAATCAAGCAGCAGGAACGGGTAAACTCTCAGAGAGAGGACATTGAGAGACAGAGGAAGCTTCTGGCTAAGAAGAAGCCACCCAGCGCAGCCCAGACTCCGCCGCCCAACCTAGAACCCAATAAACGCAAGAACAAGAGCAATGGAGCAGAGAATGAGATGTTATCGCTAGCAGAATATCACGAGCAAGAAGAAATTTTCAAATTGAGACTTGGTCACTTAAAGAAGGAGGAAGCCGAGATCCAAGTTGAATTGGAGAGGCTGGAACGAGTGCGTAATCTTCACATCCGAGAGCTTAAGAGAATACACAATGAAGATAACTCCCAGTTCAAAGATCACCCCACACTGAATGACCGCTACCTGCTCCTGCACCTGCTGGGCCGAGGTGGCTTTAGTGAAGTCTACAAGGCCTTTGACTTGACAGAACAGCGGTACGTGGCTGTGAAAATTCATCAGCTCAATAAGAACTGGAGAGACGAGAAGAAGGAAAACTACCACAAACACGCCTGCCGAGAGTATCGCATTCATAAGGAACTGGATCATCCCAGAATAGTCAAGCTCTACGACTATTTCTCTCTGGACACCGACTCgttcTGCACAGTGCTGGAGTATTGTGAAGGCAATGATCTGGATTTCTATCTGAAGCAACACAAGCTAATGTCTGAGAAAGAAGGCCGGTCCATCATCATGCAGGTTGTCAACGCCCTGAAATACCTGAACGAGATCCGCCCACCAATTATCCATTATGATCTTAAACCAGGTAACATCCTGCTGGTGAATGGCACAGCATGTGGGGAGATAAAAATCACAGACTTCGGTTTGTCTAAGATCATGGACGATGACAACTACGGCGTAGACGGCATGGAGCTTACATCGCAAGGAGCTGGGACTTACTGGTATCTGCCCCCAGAATGCTTTGTAGTAGGGAAAGAGCCACCCAAGATCTCCAACAAAGTGGATGTGTGGTCAGTTGGAGTGATCTTCTACCAGTGCCTCTATGGGAAAAAGCCGTTTGGTCATAATCAGTCGCAGCAGGATATCCTACAGGAGAACACTATACTCAAAGCCACAGAGGTGCAGTTCCCTCCCAAACCTGGAGTTTCACCTGAGGCTAAGGCCTTCATTCGTCGGTGTTTGGTGTACCGCAAGGAGGACCGTATTGATGTCCATCAGCTGGCCAGTGACCCCTTCCTGCTCCCTCACATCCGCAAATCTGTGGCCACCACGGGAAACTCCAGCACGGCCGTCGCCTCCACCTCCAGCTCATCCAATAGCAGCGCCTCAAACTGAGAGCCCCACCCATCCATACCTGTCTGATTGGATCAGAGAGAGCCGGGCTTTGTATTTGCCGTACTTGGCTCTACAGCGCCCAAGGTGGAGGATCTGCCTCTAagtatacagagagagaaaaagagagcaggaggaaggggaaagagagatggatggaacGCTGGAGCAATGTTCATCCCTCTGTACCCCTCTTCCTCTCCCCAGCAATGCAAATCTTGTATGGGGAGgggaggttttaaaaaaaaggcatccttaatgtaagagagagagaaaattccTGAGGCCATGTCATGCTAAAAGTAATAGTGGATTGAATGAAGGACAGATTTACAAGTGCTTGGACAGATAAAATGGACTGATATGTGCCCTGCacccaacaacacacacataatatacacacacacacacacacgcacacatacaggCATATTCATAAAGAAAGTTATCTTCAGTTTCTTTGAAGGCAAATAGCTAATGATGTGGGAGAACCCCCTCACTCCTACTACAGTGTCTTCTGTGTAAGATATTGCAAATGAGTTTCTTTTCCTTCCCAGTGCCCACTTCCTGTTGTACACCCTCCATCTAGGGAATTTTGCTAGTGAGTTAAATCAGTATCAATAGCCCATATTTCAATCAGCCATATCAAAACCACCATCATTCAAACAAATAACCAGTGCTAAAACGaaagctgttttctttttgccaGTTGGGAATTGTAATGGTGAAGTCTTACGgcgctttttattttaaaaaaaaaaattttttttttggcttatttgTCGTCCCCCCGCCCCGCCCCCCATTCGAGACCATTGTGTTGGTCAAGTCTCACTTTCTTCCACCCCCTCCTTCTCTGTGACCAAAGCGGAGCTCTGCCAGCAGGTGGTGCTGTTTAACTTGAGATTTCTTtttctaataattattttaaaaatggttttgaTGTGAAGACATGTTTTAGAAAAGCTATTGTTGTAGATGGTTTAGTGTTACTAACGGAAGGCCCCAAGTATGTTCTATTTTCTGTTATAATTGgaaaaattaacactttttttttttttttttgtttttaatctgagATTTAAGGTagaatttctattttattattttttcttttttccatgatTTTAACGTTTCTCTCATGCACCTACATACACATGCGCATACACTCGCACCCACTCACGCTCATATTTATTTAGGTCTGTTTAAATAGCTGATTCCTGGTCCTGATTGTCTACTGTGTGGGGAAGAGGACTTTTTGGAGGGAGGGGGGATAGTAAATGACGGGTACAGGGCAGAAATGGCAATGATCATTAAATACTGTTGGTTAAAAATTTC
>XM_034310024.1
TCATGATGGAGGAACTGCACAGCTTGGATCCTCGGAGGCAGGAGCTGCTCGAGGCTCGATTCACTGGGGTCGGAGTCGCCAAGGGTTCTGGGCACAACGAGTCATCCAATCATAGCCTGTGTAGCGTAGGCTCTCTGAGTGACAAAGAGCTTGAGacacctgaGAAGAAGCCGAATGACCAGAGAACACGTAAGAGGAAAGGAGACCCCTTTGACAGCCAAGCCAAAGCAGGAGGCCGAGGACACaaaatcagtgattattttgaGgtgcaGCAAGGAAGTCCGTCCTCTATCAATTCCAATACAGACCACTCCCACTCATCGTGCACCCTCAAaccagctttcacacacacgcagcacagGGCAACACAGTCGGACATGACTCTGGAGAAGCTGGCTGCGTTGGAGAGCAGTAAGAGTTCAGACCTCGAGAAAAAAGAGGGACGCATCGATGATTTGCTCAGGgTGAACTGTGACCTGCGCAGACAGATCGATGAGCAGCAGAGAATGTTGGAGCGCTGTAAGGAGCGCCTCAATAAGTGTGTTACTATGAGCAAGAAACTGCTCATTGAGAAGtcgaAGCAGGAGAAGATGGCGTGCAGGGACAAGAGCATGCAGGACCGTCTCCGACTGGGCCATTTCACTACAGTGCGACACGGCGCATCCTTCACGGAGCAATGGACCGACGGATATGCCTTTCAGAATTTAATCAAGCAGCAGGAACGGGTAAACTCTCAGAGAGAGGACATTGAGAGACAGAGGAAGCTTCTGGCTAAGAAGAAGCCACCCAGCGCAGCCCAGACTCCGCCGCCCAACCTAGAACCCAATAAACGCAAGAACAAGAGCAATGGAGCAGAGAATGAGATGTTATCGCTAGCAGAATATCACGAGCAAGAAGAAATTTTCAAATTGAGACTTGGTCACTTAAAGAAGGAGGAAGCCGAGATCCAAGTTGAATTGGAGAGGCTGGAACGAGTGCGTAATCTTCACATCCGAGAGCTTAAGAGAATACACAATGAAGATAACTCCCAGTTCAAAGATCACCCCACACTGAATGACCGCTACCTGCTCCTGCACCTGCTGGGCCGAGGTGGCTTTAGTGAAGTCTACAAGGCCTTTGACTTGACAGAACAGCGGTACGTGGCTGTGAAAATTCATCAGCTCAATAAGAACTGGAGAGACGAGAAGAAGGAAAACTACCACAAACACGCCTGCCGAGAGTATCGCATTCATAAGGAACTGGATCATCCCAGAATAGTCAAGCTCTACGACTATTTCTCTCTGGACACCGACTCgttcTGCACAGTGCTGGAGTATTGTGAAGGCAATGATCTGGATTTCTATCTGAAGCAACACAAGCTAATGTCTGAGAAAGAAGGCCGGTCCATCATCATGCAGGTTGTCAACGCCCTGAAATACCTGAACGAGATCCGCCCACCAATTATCCATTATGATCTTAAACCAGGTAACATCCTGCTGGTGAATGGCACAGCATGTGGGGAGATAAAAATCACAGACTTCGGTTTGTCTAAGATCATGGACGATGACAACTACGGCGTAGACGGCATGGAGCTTACATCGCAAGGAGCTGGGACTTACTGGTATCTGCCCCCAGAATGCTTTGTAGTAGGGAAAGAGCCACCCAAGATCTCCAACAAAGTGGATGTGTGGTCAGTTGGAGTGATCTTCTACCAGTGCCTCTATGGGAAAAAGCCGTTTGGTCATAATCAGTCGCAGCAGGATATCCTACAGGAGAACACTATACTCAAAGCCACAGAGGTGCAGTTCCCTCCCAAACCTGGAGTTTCACCTGAGGCTAAGGCCTTCATTCGTCGGTGTTTGGTGTACCGCAAGGAGGACCGTATTGATGTCCATCAGCTGGCCAGTGACCCCTTCCTGCTCCCTCACATCCGCAAATCTGTGGCCACCACGGGAAACTCCAGCACGGCCGTCGCCTCCACCTCCAGCTCATCCAATAGCAGCGCCTCAAACTGAGAGCCCCACCCATCCATACCTGTCTGATTGGATCAGAGAGAGCCGGGCTTTGTATTTGCCGTACTTGGCTCTACAGCGCCCAAGGTGGAGGATCTGCCTCTAagtatacagagagagaaaaagagagcaggaggaaggggaaagagagatggatggaacGCTGGAGCAATGTTCATCCCTCTGTACCCCTCTTCCTCTCCCCAGCAATGCAAATCTTGTATGGGGAGgggaggttttaaaaaaaaggcatccttaatgtaagagagagagaaaattccTGAGGCCATGTCATGCTAAAAGTAATAGTGGATTGAATGAAGGACAGATTTACAAGTGCTTGGACAGATAAAATGGACTGATATGTGCCCTGCacccaacaacacacacataatatacacacacacacacacacgcacacatacaggCATATTCATAAAGAAAGTTATCTTCAGTTTCTTTGAAGGCAAATAGCTAATGATGTGGGAGAACCCCCTCACTCCTACTACAGTGTCTTCTGTGTAAGATATTGCAAATGAGTTTCTTTTCCTTCCCAGTGCCCACTTCCTGTTGTACACCCTCCATCTAGGGAATTTTGCTAGTGAGTTAAATCAGTATCAATAGCCCATATTTCAATCAGCCATATCAAAACCACCATCATTCAAACAAATAACCAGTGCTAAAACGaaagctgttttctttttgccaGTTGGGAATTGTAATGGTGAAGTCTTACGgcgctttttattttaaaaaaaaaaattttttttttggcttatttgTCGTCCCCCCGCCCCGCCCCCCATTCGAGACCATTGTGTTGGTCAAGTCTCACTTTCTTCCACCCCCTCCTTCTCTGTGACCAAAGCGGAGCTCTGCCAGCAGGTGGTGCTGTTTAACTTGAGATTTCTTtttctaataattattttaaaaatggttttgaTGTGAAGACATGTTTTAGAAAAGCTATTGTTGTAGATGGTTTAGTGTTACTAACGGAAGGCCCCAAGTATGTTCTATTTTCTGTTATAATTGgaaaaattaacactttttttttttttttttgtttttaatctgagATTTAAGGTagaatttctattttattattttttcttttttccatgatTTTAACGTTTCTCTCATGCACCTACATACACATGCGCATACACTCGCACCCACTCACGCTCATATTTATTTAGGTCTGTTTAAATAGCTGATTCCTGGTCCTGATTGTCTACTGTGTGGGGAAGAGGACTTTTTGGAGGGAGGGGGGATAGTAAATGACGGGTACAGGGCAGAAATGGCAATGATCATTAAATACTGTTGGTTAAAAATTTC

Function

symbol description
tlk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including intracellular signal transduction; peptidyl-serine phosphorylation; and regulation of chromatin assembly or disassembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human TLK2 (tousled like kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase tousled-like 2 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08864 TLK; tousled-like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310023.1 True 3428 mRNA 0.47 20 8047426 8062595
XM_034310024.1 False 3329 mRNA 0.46 19 8047426 8062595

Neighbor

gene id symbol gene type direction distance location
mettl2a LOC108279476 coding upstream 4623 8031681 ~ 8042803 (+)
itgb3a LOC108279461,LOC108413591 coding upstream 19535 8010533 ~ 8027891 (+)
tcap LOC108261065,LOC108413611,LOC107684635 coding upstream 92181 7953794 ~ 7955245 (+)
syngr1a syngr1a,LOC108261039,LOC108413620 coding upstream 97178 7933366 ~ 7950248 (+)
fam171a2a fam171a2,LOC108258145 coding upstream 115915 7884149 ~ 7931511 (+)
mrc2 mrc2 coding downstream 8119 8070714 ~ 8114585 (+)
vat1 vat1,LOC108413532,LOC107567018 coding downstream 101248 8163843 ~ 8200783 (+)
asb16 asb16 coding downstream 149434 8212029 ~ 8218351 (+)
tmub2 tmub2,LOC107708558,LOC107660620,LOC107566939,LOC107571926 coding downstream 156930 8219525 ~ 8226005 (+)
ngfra ngfr coding downstream 248421 8311016 ~ 8358151 (+)
G207570 NA non-coding upstream 12053 8033925 ~ 8035373 (+)
G207483 NA non-coding upstream 191537 7855431 ~ 7855889 (+)
LOC113528563 NA non-coding upstream 355757 7686051 ~ 7691669 (+)
G207309 NA non-coding upstream 479613 7564303 ~ 7567813 (+)
G207158 NA non-coding upstream 518688 7444823 ~ 7528738 (+)
LOC117599010 NA non-coding downstream 57857 8120452 ~ 8143237 (+)
G207610 NA non-coding downstream 95349 8157944 ~ 8158181 (+)
G207616 NA non-coding downstream 138697 8201292 ~ 8201592 (+)
LOC113528504 NA non-coding downstream 146703 8209298 ~ 8209867 (+)
G207612 NA non-coding downstream 174138 8236733 ~ 8250981 (+)
trnas-cga_1 NA other upstream 39015 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 193917 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 725461 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 915459 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 945211 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 887871 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 998968 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1881711 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 2286807 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 3217485 11280080 ~ 11388020 (+)

Expression


Co-expression Network