LOC113528197


Basic Information

Item Value
gene id LOC113528197
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8876232 ~ 8882985 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310049.1
actGGCACTCTGCCACAGCTGAGTTCATTTCTAAAGCCCAAGTGGTGGTCAAACAAGGTTGGAGTCCACCAGGAGAGTGGCCATGATCAGATGCCAGGTCCTTCAGGGGCAAGGAGAGAGTCTGAAGACCGACCAGAGCAAGTCAACACCCAGTGCCATTTCAACAACCAGCAGCACAGGAAGAAACCTCAGTTTCCCTTGACACCCACAGATGTGGTCAGGCATTTTGGGGACAGGTTGACTTATTTTGATCTGAAAGAGATCAGTGAATACTCTGAGATCTGGTACCTGGGCAAGAAAATTGGTGGATCACTTCGCAATGCTGAATTGAATGGCAACATCTTCCAGgtttCCCATGATCACATAGCTTATCGGTATGAGGTGTTGGAAATGCTTGGAGAAGGATCCTATGGACAGGTTTTTAAGTGTCTGGATCACAAGACCAATGAGATGGTGGCTATTAAAATCATTCAAGACATGAGAACTTACAGGGAAGAGGTGGAAATCCTCGATTATTTGAGGAAGAAGGACAGAAATGGCTCCTACAACATCGTCTTCATGAAGACCCACTTTTACTTCCGCAAACGCCTCTGTATTGTCTATGAGCTCCTGGGGCCAACTTTAAGTGAGCTAAAAAGAATTCAGAGATTCAGCAAAGCTGATGTGCGCCGCATTGCCAAAGATGTGGTCAGGTGTCTAAGGTTactagagaaagagaaaattatCCACGGTGACCTGAAACCTGGGAACATAACGCTAAAAGAGAAAGGCCAGGGTGTCAAGGTGATCGATTTTGGAGGCAGCAGCTTTGAGCAGAAGAAGCTGTTCCCAGGTATTCATACTCGTATCTACAGCCCTCCAGAGGTATTAATGAAAAATCACTATACCACTGCTATTGACATGTGGAGTCTGGGCTGTATCCTTGCTGAGCTCCACACTGGTCGGTATCTCTTTCCTGGAGTGGATGACTATGATCAAATAGCCCTCATCATGGAGGTGCTTGGAAGGCCTCCAACTGAATTTGTCCAGGAGGAGAAAACTTGGAATTTTTTCTATAACCATAAAGGACACTGGAGGAAGATATACGATAGCAAAGACAGGGTGATAAAGCCGCGTTCCAAGGATCTGAAGACAATTCTGGATACTGATGATCTTCAGTTCCTGGACTTTATCCAGCGCTGCCTAAACTGGAACCCTGAGAAGCGCCTCACTCCTATGGAGGCTATGAAGCATCCATGGCTTCATAGTGACAGCTGTAGGTGCAGAGCCAGGACAAGAGCTCCAAAGCAAGCCAGTTGAGATGACAGCATGGCATTTACCAAGCATCCCTACCTTTAAGACTTTAATGAAGAGGTTTTACGGCACTGATTCGGACACAGAAGAACGTTCAGGGAGAGTGAAGGAGGTCTCTTCTGAGCACACCCCACACGCCGCTGTTGAAGACTGGAATCACAAGGGCCACGTCCCAAACTGCAAACTACACAGCATTGGCAGACAGGAGGCGTTGTTTGGAAGGCATTACCAGCAAAACGTGCAACTACCAGAAAATGTTGCCAGTGGTTTGGAGATTCCAGATCAGATTCCACCTATAACATTTACAAGCTTAGCATTTTGTTATTAGAATAGTGGAAATTGGAGGGTTATCTTTAGGGCTATTTACTTGATCAGAGGTCATACAAAATTTTCAAGGAAAATTCAGCAGGGCTCCCAAATTACTGACCCACGCCATAGACCCGGGCTATTCATCAAGAGGCCCACTGACCTTTTCCCTTCACccagtttctttttctgtcacGTTGCAGTGTGTATGTCACAGATTTAACTGGATAACCAAACTAAGTTATTCAAATGTCTGACTGCAGtcaagacagaaagacagacacacaattCTATTTCACTGCTGCAAGAAAAGCTGAATTTTGTGCACATTCTCAAAGTGTCATTTAACCCTCTCCTGTTGAACTCCTATAGGTGGGACCCTAAGCAGTGTCTCACCACAAAGGATGCAGCATCTCTCTTCAGGAAGATTGCTCCAGGAGTGGAACCAGTACAATTTTGAGAAAATGTACAATTCTGATTTTATCTTAGTGTTGTCAAACCTCCAACACATTAATGATAATGCTAAACTATGTTCAGAATGATGATGCACGGTTTCTTTCAGCTATGCTAAAATGTCCAGTGTCAGCTGAGGAGAACAGCTCCCCTAAGAGTCAGGTCTCTCCTGAGGTTTCTCCATAAAGCTAACTAAAAATAACctggagtttttcctcaccgctGTCACTCTTTTGGGGTTAAGGCACTGGCTAAAGTAGACCCACATAAAATGAGATCTATTATGTGTAGACGGCAATAACATTCAGGAATGATGGTGATTTAATCTGTGGTGAGGAGAGAGTGGCCCTCTCATCACCAATACAAAATGTGGGACTGTTAGATTCTAGACTAGTCAGCAGAGATAAATCAAAAGTAAGCCTAACACTCTGTTCTCTATGTCTCAGACAGCCATCATAGCATTGCAATAAAACATATCTTCTATAAAGTGATGTGTTGTTGATCTTTACTGCAAAGTTCCCAGGGAATCTCCTTAGTGAGAAGTTTTAGTGAGGAAAATCTTACAATGGGAAACCATATCAAGGTTCCCCATCTTAAAGTAAACCCAGGCAGTGTGAAGCAGCTCATAATAAGAGAATACAGCTTTAGTTATTGTACTTTTTGGGAAAGATAAGTGAAGCGTTAAGTGATGTAACCTCAGTGGTACCACATATGTACAGTAAAAGTTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310049.1 True 2783 mRNA 0.44 12 8876232 8882985

Neighbor

gene id symbol gene type direction distance location
LOC113528198 NA coding upstream 2767 8843197 ~ 8873465 (+)
LOC113528522 nxph3,LOC107660556,LOC105012985,LOC107754835,LOC107590800,LOC107710880,LOC107568907 coding upstream 391288 8454003 ~ 8484944 (+)
ngfra ngfr coding upstream 518081 8311016 ~ 8358151 (+)
tmub2 tmub2,LOC107708558,LOC107660620,LOC107566939,LOC107571926 coding upstream 650227 8219525 ~ 8226005 (+)
asb16 asb16 coding upstream 657881 8212029 ~ 8218351 (+)
LOC113528067 NA coding downstream 4420 8887405 ~ 8893797 (+)
LOC113528069 NA coding downstream 13633 8896618 ~ 8902677 (+)
LOC113528196 NA coding downstream 19743 8902728 ~ 8904664 (+)
LOC113528195 NA coding downstream 26685 8909670 ~ 8915323 (+)
LOC117598844 NA coding downstream 33963 8916948 ~ 8921493 (+)
G208004 NA non-coding upstream 1940 8851803 ~ 8874292 (+)
G207932 NA non-coding upstream 70799 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 103756 8752715 ~ 8772476 (+)
G207980 fam57b non-coding upstream 108327 8764526 ~ 8767905 (+)
G207927 NA non-coding upstream 158955 8692721 ~ 8717277 (+)
G208105 LOC107552474,LOC107739385,LOC107754658 non-coding downstream 99042 8982027 ~ 8983311 (+)
G208120 NA non-coding downstream 139190 9022175 ~ 9022947 (+)
G208122 NA non-coding downstream 144304 9027289 ~ 9027537 (+)
G208124 NA non-coding downstream 146686 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 148408 9031393 ~ 9031921 (+)
trnas-cga_1 NA other upstream 867821 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1022723 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1554267 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1744265 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 1774017 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 67481 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 178578 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1061321 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1466417 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2397095 11280080 ~ 11388020 (+)

Expression


Co-expression Network