LOC113528195


Basic Information

Item Value
gene id LOC113528195
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8909670 ~ 8915323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310050.1
AGAAGGAAAAAACCTTAGAACTTTAGACACAAAggtcttcaagagagagaagactACCTGAAGTCAGAGGACACACAATATCATGGAAATTTATTTGTGGAAgattgtgtgtgtagtatgtgctCTACTCCTTAATGCTACAGGCTTACTCTCCCAGCTGGATGTGTGTGGTCGGCCTCCACTGAACACCAAGATTGTGGGTGGTGAAGATGCTGCTCCTGGGTCCTGGCCTTGGCAGGTCAGCATTCAGTCAGGAGGCTTCCATTTCTGTGGTGGCAGCCTGATCAATGAGAACTGGGTCTTATCGGCTGCTCACTGTTTCCAAAGcatTACTGCACCTGAAATCACAATCTATCTAGGAATGGAAAGTCTGGAGGGAACTAACTCTAATATGCAGAAAACAGGCACTAGTAGCATTATTAATCACCAAGAGTATAACCCTACCACCCATGACAATGATATTGCACTAGTCCAGCTCTCCTCTTCAGTTAATTTCACCAATTATGTCATGCCAGTGTGCCTTGCAGCAAGCAACAGTTCTTTTCCTGGTGGTACTAATGTCTGGGTCACAGGATGGGGTAAAATTGCATCCAGCGTGAATCTGCCGTTCCCTAAAACCCTGCAGGAGGTGCAGGTGCCGATTGTCAGTAACAGTGACTGTGCAAAAGCATATGGATCTGGCTCTATCACAGACAATATGATGTGTGCTGGCTTAACTCAAGGAGGAAAAGACTCATGTCAGGGTGATTCTGGAGGTCCACTGGTGGTCAAGATCGGTGGAACATGGGTTGAGGCTGGGATTGTGAGCTTTGGCCATGAATGCGCTTTGCCTAATTTCCCCGGTGTGTACACCAGAGTGTCTCAGTATGAAGACTGGATTAACAGCAAGATCAGCAACAATCAACCTGGATTTATTCAATTCTCAAATGGCAATCATGGCTCCCCCAACCTCTTCTGTCTGTTCCTTTCTTCTTCCATCATCCcattcctcctctccctctaCAACTCCTAGTGATATCAGTCAAATTAAACATACAAGCAAAACAAAAGGAGTGAGTTAACATTACTATATTATATCAATGCCTTACACAAGATCCATACTTAGCTTTTATCTGTAGCTTTTACTTAAGTACTTAACGGACATATGTCAACTTAATTTTCTACAAATCTCTTGATTTTTGGGTGACAGCAATTCATaatgtgaagctttctgtaacaGAACGACCAAGCCTAATGCAATAATATTGTGAAGTGTCatgatttaataaacatttgatacagtaattaatgttttttgtacATAATGTAGTGAGGTATTACATTATATGTGgtttattacattatacattgAGTAGAAAAAATTAACAGCAGAATGCTACTATACCAACTGTACACCTGTACCAACA

Function

GO: NA

KEGG:

id description
K08664 PRSS8; prostasin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310050.1 True 1406 mRNA 0.42 6 8909670 8915323

Neighbor

gene id symbol gene type direction distance location
LOC113528196 NA coding upstream 5006 8902728 ~ 8904664 (+)
LOC113528069 NA coding upstream 6993 8896618 ~ 8902677 (+)
LOC113528067 NA coding upstream 15873 8887405 ~ 8893797 (+)
LOC113528197 NA coding upstream 26685 8876232 ~ 8882985 (+)
LOC113528198 NA coding upstream 36205 8843197 ~ 8873465 (+)
LOC117598844 NA coding downstream 1625 8916948 ~ 8921493 (+)
cabp5b LOC108274992,LOC108410601,LOC107568513,LOC107552460,LOC107755172,LOC107689105,LOC107661251 coding downstream 46825 8962148 ~ 8966280 (+)
LOC113528379 LOC108274113 coding downstream 71249 8986572 ~ 8990189 (+)
sh2b1 sh2b1,LOC108410604,LOC102776240,LOC104967735 coding downstream 78195 8993518 ~ 9006845 (+)
atxn2l atxn2l coding downstream 94262 9009585 ~ 9021533 (+)
G208004 NA non-coding upstream 35378 8851803 ~ 8874292 (+)
G207932 NA non-coding upstream 104237 8804488 ~ 8805433 (+)
LOC113528294 zwi non-coding upstream 137194 8752715 ~ 8772476 (+)
G207980 fam57b non-coding upstream 141765 8764526 ~ 8767905 (+)
G207927 NA non-coding upstream 192393 8692721 ~ 8717277 (+)
G208105 LOC107552474,LOC107739385,LOC107754658 non-coding downstream 66704 8982027 ~ 8983311 (+)
G208120 NA non-coding downstream 106852 9022175 ~ 9022947 (+)
G208122 NA non-coding downstream 111966 9027289 ~ 9027537 (+)
G208124 NA non-coding downstream 114348 9029671 ~ 9029875 (+)
G208125 NA non-coding downstream 116070 9031393 ~ 9031921 (+)
trnas-cga_1 NA other upstream 901259 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1056161 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 1587705 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1777703 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 1807455 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 35143 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 146240 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1028983 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 1434079 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 2364757 11280080 ~ 11388020 (+)

Expression


Co-expression Network