bcat2 (bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480)


Basic Information

Item Value
gene id bcat2
gene name bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2092559 ~ 2114069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310052.1
CTTTTAGCACGGACACGCACATCCGGAACGGTTAAGGAAGCGGTGTTTGTTGCCAGCCGGTCAGATTTTGGTGTGAAGCGGCGGTGTGATGGCGGCGCTGAGGACGgcattCTGTGGGCGTTTCCTGCAGCCTCTCCCCGTGTATTCGGGATCTCTGCGCTTCGCCAGTTCGTCTTTCAAGGCTGCAGATCTGACCATTGAGAAGAGGCAGACGCCGAACCCCAAGCCCGACCCGTCCAACTTGGGCTTTGGGAAGTTTTTCTCTGATCACATGTTGACTGTGAAGTGGTCGGAGAAAGGAGGATGGGAAGCTCCTCAGATTAAACCCTTCCAAAACCTGTCGCTCCACCCGGCGTCCTCCGCCCTGCACTACTCCATCGAGCTGTTTGAGGGGATGAAGGCGTTCCGCGGAGTGGATAATCAGATCCGTCTGTTCCGGCCCATGCTGAACATGGAGCGCATGTATCGCAGTGCAGACCGCTGCTGCCTGCctCTGTTTGATAAGAGCGAGCTGCTGGAGTGCATTAAGAAGCTGATCGAGCTGGACCACGAGTGGGTTCCGTACTCCACCAGCGCCAGCCTTTACATCAGACCCACCTTCATCGGCACTGAGCCTTCTTTGGGCGTGTCTCAACCAAGCCACGCCCTCCTGTTTGTCATCGTGGGGCCGGTGGGGCCGTATTTCGCCACGGGAGCCTTCAGTCCCGTGTCCCTGCTGGCGGATCCTCGCTTCGTGCGAGCCTGCAGGGGCGGAGTGGGAGCGTACAAGATGGGCAGtaacTATGGGCCCACTATAGCCATCCAGGTCGAGGCGGTGAAGCAGGGCTGCCAGCAGGTGCTGTGGCTGTACGGCGACAGAGAGGAGATCACTGAGGTCGGCACCATGAACCTCTTCATCTACTGGACCAATGAGAAAGGagAGCGAGAGCTGGTCACCCCTCCACTAGACGGCATCATTCTCCCCGGAGTCACCAGACAGTCTCTCCTGGACCTGGCCAGGGAgtggGGTGAGTTTAAGGTGACGGAGCGGACGCTGGTCATGAAGGAGCTGCTGGACGCTCTGAACGGAGGACGGGTGTTGGAGGTGTTTGGGGCGGGGACGGCGTGTGTGGTGTGTCCCGTCGGCAGCCTGCTCTATAAAGGACAGCACTTTGAAATCCCGACCATGAAGAACGGTCCTGAGCTCGCCACCAGGTTCCACAAGGAGCTCACCGATATCCAGTACGGACGCACGAGGAGGGACTGGGCGCCGGTCATCGTCGCCTGATTGGACCGCTTTCCTCCAGTCACCTGCCGGCTGCTCACATTCACACTGTAGCCTTGATTTCTCTTATGTTACGTGTAGAGACTGAAAAGGCTTTACTGTTCTAAAGTAACCATTTTAGTGAGCGGTCCATTGGAAACCTGTCACTGATCAACTGGTAATGAACGCAGcaaaaaccaccaccaccaccaccaccacacctcTAACACACGTGCATGTTTGTCTGATAGAAATGtcgtttcatttttataataaatttatccAGCCTCGAGAGTGCGTAGTGCAACGTGTAGCAATAGAGCAGCTGTGAGGTTAAAAATACGAAGCACAATATATGCAAATGACGTTGGTAGAAATATCGTAAGTGCAATAAGGTTCAAATCGTCTGCTTGTGGAATTGTTGAtgattacttgttttttttgttttgtttttgtttttttcttttaaacggGTGAGCTAACTTTAGCCGCTAACACAACCATTTCTGTGTGTTCTTCCAACGGATGTGAACATTTAGACTAGTTACAAGTCTCACTCATCGATCTGTTATGTTTACCATcgcctttattattattattattagtagtagtagtattattattaacatatagTTTAAAATCAGGTTTTGATGTTTTGTATACGTGTAAttgcagagaaaataaatgttcagaaatTTAACAAAGTAGTGGCATCATACAGTGCtctccagaaatattggcacccttcatgaagcagagtgttttgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacactaacaaatgtagtaagtgatattttgagcttaatAAAACCAGGACATTGTATTTGGGTGggggaaaatgtttaaataaaacactatacGCTCCAACCCCcctcaaaattattggcaccctgccTTGGAGAGAATTCGTTAAAATATCCCTTAGGGGTGTCAATaatcacaaattttttttttttcttttttttttttttttccgagaaattttgtttgggtgtgtgtaCAGCGACCaagtgcgtgcacacacacacacacacacacacacacacacacacacacacacacaccctaattgcattattatattattattatttttaattgttgatCAGTAGTTCTTAATAGAATGAGTAATTGTTCCTGTTGAGGggaaattttaattgttttgtgtttttttttttttt
>XM_034310053.1
TCGTGTCGTCCAATCAGAGgcattCTGTGGGCGTTTCCTGCAGCCTCTCCCCGTGTATTCGGGATCTCTGCGCTTCGCCAGTTCGTCTTTCAAGGCTGCAGATCTGACCATTGAGAAGAGGCAGACGCCGAACCCCAAGCCCGACCCGTCCAACTTGGGCTTTGGGAAGTTTTTCTCTGATCACATGTTGACTGTGAAGTGGTCGGAGAAAGGAGGATGGGAAGCTCCTCAGATTAAACCCTTCCAAAACCTGTCGCTCCACCCGGCGTCCTCCGCCCTGCACTACTCCATCGAGCTGTTTGAGGGGATGAAGGCGTTCCGCGGAGTGGATAATCAGATCCGTCTGTTCCGGCCCATGCTGAACATGGAGCGCATGTATCGCAGTGCAGACCGCTGCTGCCTGCctCTGTTTGATAAGAGCGAGCTGCTGGAGTGCATTAAGAAGCTGATCGAGCTGGACCACGAGTGGGTTCCGTACTCCACCAGCGCCAGCCTTTACATCAGACCCACCTTCATCGGCACTGAGCCTTCTTTGGGCGTGTCTCAACCAAGCCACGCCCTCCTGTTTGTCATCGTGGGGCCGGTGGGGCCGTATTTCGCCACGGGAGCCTTCAGTCCCGTGTCCCTGCTGGCGGATCCTCGCTTCGTGCGAGCCTGCAGGGGCGGAGTGGGAGCGTACAAGATGGGCAGtaacTATGGGCCCACTATAGCCATCCAGGTCGAGGCGGTGAAGCAGGGCTGCCAGCAGGTGCTGTGGCTGTACGGCGACAGAGAGGAGATCACTGAGGTCGGCACCATGAACCTCTTCATCTACTGGACCAATGAGAAAGGagAGCGAGAGCTGGTCACCCCTCCACTAGACGGCATCATTCTCCCCGGAGTCACCAGACAGTCTCTCCTGGACCTGGCCAGGGAgtggGGTGAGTTTAAGGTGACGGAGCGGACGCTGGTCATGAAGGAGCTGCTGGACGCTCTGAACGGAGGACGGGTGTTGGAGGTGTTTGGGGCGGGGACGGCGTGTGTGGTGTGTCCCGTCGGCAGCCTGCTCTATAAAGGACAGCACTTTGAAATCCCGACCATGAAGAACGGTCCTGAGCTCGCCACCAGGTTCCACAAGGAGCTCACCGATATCCAGTACGGACGCACGAGGAGGGACTGGGCGCCGGTCATCGTCGCCTGATTGGACCGCTTTCCTCCAGTCACCTGCCGGCTGCTCACATTCACACTGTAGCCTTGATTTCTCTTATGTTACGTGTAGAGACTGAAAAGGCTTTACTGTTCTAAAGTAACCATTTTAGTGAGCGGTCCATTGGAAACCTGTCACTGATCAACTGGTAATGAACGCAGcaaaaaccaccaccaccaccaccaccacacctcTAACACACGTGCATGTTTGTCTGATAGAAATGtcgtttcatttttataataaatttatccAGCCTCGAGAGTGCGTAGTGCAACGTGTAGCAATAGAGCAGCTGTGAGGTTAAAAATACGAAGCACAATATATGCAAATGACGTTGGTAGAAATATCGTAAGTGCAATAAGGTTCAAATCGTCTGCTTGTGGAATTGTTGAtgattacttgttttttttgttttgtttttgtttttttcttttaaacggGTGAGCTAACTTTAGCCGCTAACACAACCATTTCTGTGTGTTCTTCCAACGGATGTGAACATTTAGACTAGTTACAAGTCTCACTCATCGATCTGTTATGTTTACCATcgcctttattattattattattagtagtagtagtattattattaacatatagTTTAAAATCAGGTTTTGATGTTTTGTATACGTGTAAttgcagagaaaataaatgttcagaaatTTAACAAAGTAGTGGCATCATACAGTGCtctccagaaatattggcacccttcatgaagcagagtgttttgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacactaacaaatgtagtaagtgatattttgagcttaatAAAACCAGGACATTGTATTTGGGTGggggaaaatgtttaaataaaacactatacGCTCCAACCCCcctcaaaattattggcaccctgccTTGGAGAGAATTCGTTAAAATATCCCTTAGGGGTGTCAATaatcacaaattttttttttttcttttttttttttttttccgagaaattttgtttgggtgtgtgtaCAGCGACCaagtgcgtgcacacacacacacacacacacacacacacacacacacacacacacaccctaattgcattattatattattattatttttaattgttgatCAGTAGTTCTTAATAGAATGAGTAATTGTTCCTGTTGAGGggaaattttaattgttttgtgtttttttttttttt

Function

symbol description
bcat2 Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in leucine biosynthetic process and valine biosynthetic process. Predicted to act upstream of or within branched-chain amino acid biosynthetic process and cellular amino acid biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human BCAT2 (branched chain amino acid transaminase 2).

NR:

description
PREDICTED: branched-chain-amino-acid aminotransferase, cytosolic-like isoform X2

GO:

id name namespace
GO:0009082 branched-chain amino acid biosynthetic process biological_process
GO:0052654 L-leucine transaminase activity molecular_function
GO:0052655 L-valine transaminase activity molecular_function
GO:0052656 L-isoleucine transaminase activity molecular_function

KEGG:

id description
K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310052.1 True 2500 mRNA 0.47 11 2094377 2114069
XM_034310053.1 False 2413 mRNA 0.46 11 2092559 2114069

Neighbor

gene id symbol gene type direction distance location
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 1106 2084552 ~ 2091453 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding upstream 31489 2012233 ~ 2061070 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding upstream 189373 1890285 ~ 1903186 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 222389 1854742 ~ 1870170 (+)
zgc:195001 LOC108274956 coding upstream 253221 1828671 ~ 1839338 (+)
grna NA coding downstream 16459 2130528 ~ 2174611 (+)
LOC117598829 NA coding downstream 41530 2155599 ~ 2155849 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding downstream 73296 2187365 ~ 2195026 (+)
slc25a39 LOC108276595,LOC108434938 coding downstream 84680 2198749 ~ 2212411 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 125540 2239609 ~ 2258256 (+)
G203935 NA non-coding upstream 83953 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 105344 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 170080 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 220999 1856423 ~ 1871560 (+)
G203885 NA non-coding upstream 267266 1824978 ~ 1825293 (+)
G203955 NA non-coding downstream 40367 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 84044 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 110480 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 144413 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 274915 2388984 ~ 2392499 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 104644 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 203044 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 472585 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 731099 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 855357 1220494 ~ 1237202 (+)
rundc1 rundc1 other downstream 63614 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 753699 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 889539 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1078635 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1420220 3534289 ~ 3661164 (+)

Expression


Co-expression Network