nucb1 (nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899)


Basic Information

Item Value
gene id nucb1
gene name nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1890285 ~ 1903186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310055.1
GTGGATGACGCAATCATCCCGGGACCGTTATATTTCAAGAAACGCGACGACGGAACTCAAAGTAAGTGTAGCGTGCGGAGGGGCTTGTTTATTTTCGGAGGACAAGAAGACGGTAAAACGTGTTAGACACAGTCTGATGGTATGGTGGGCGTTTGTGTCTGGCTGCtgctcctgtctgtctctctcagggtGACGTCAGTGCCCATAGAGCGCAATCCTCCGGCACCGGACGAGAAAGCGGAGGAAAACGTGgacacaGGGCTGTATTATGATCGTTACCTGAGGGAGGTGATCGAGGTTCTGGAGACGGATCCTCACTTCAGAGAGAAACTGCAGAGCGCAAACACCGAGGATAttaaaAATGGACGCCTCAGTAAGGAGCTGGATCTGGTGGGTCACCATGTCCGAACTCGTCTGGACGAGCTGAAGAGGCAGGAAGTGTCTCGCCTCAGGATGCTGCTGAAGGCCAAACTGGACAGCACCAACATGCAGaGTGTTCAGATGGATCACGTGTCCTTACTGAAGCAGTTCGAGCATCTGGACCCTCACAATCAGAACACATTCGAGGCCAAAGACCTGGAGCTGCTCATCGCGACGGCCACTAAAGACCTGGAGAACTACGATGCGGAGCGTCACGAGGAGTTCAAGCGTTACGAGATGCTGAAGGAGCACGAGAGGAGGGAGTACCTGAAGAGTCTGGACCAggagaagagggagagggaggagaagaggatggaggagatGAAGGAAAAACACCGCCAGCATCCCAAAGTCAACGCCCCGGGGAGTGTGGACCAGCTGAGAGAGGTGTGGGAGGAGACGGACGGGCTGGACCCACAGGAGTTCAACCCCAAGACCTTCTTCAAACTCCACGACACTAATGGAGACGGAGTGCTGGACGAACAGGAGCTGGAAGCGCTCTTCACAAAGGAGCTGGAGAAGGTGTACGACCCGAAGAACGAGGAGGACGACAtgatggagatggaggaggagagactGCGGATGAGGGAACACGTCATGCAAAACGTGGACCTGAATCACGACCGGTTGGTCAGCCTGGACGAGTTCCTCAGATCGACGGAGAAGAAAGAGTTCAGCAGCCCGAAGGAGTGGGAGacgCTGGATGACAAGAAGCCGGTGTACACGGAGGAGGAGCTTCAGCGCTTTGAGGCGGAGCTTTGGGATAAACAGGTGGAGCTCAGCAGGAGGGCGGAGACTCTGAGACAAGAACAGGAGCTTCTGAAGGAGAGAGGCAAAGCGCTGGAGGCCCAAAAGAAAGAGTACCAACAGGCGGTGATGGAGATGTCGCAGAGACAGAAAGCCCAGCAGGCGGCACGCCAGCCGCCTCCATCAGGCCCGAACGGAGAACTGCGCTTTCAGCCGGACGCTCAGAACCTGGCTCAGGAACATAATCAAGttGGAAAGGTGCCTATCGATCAGAACGGAGACGTCCAGAACGGCCCGCCTGCTGAGCCGCCACAGAACCTTcctcaacacacacagtaacagctCACCTcacgtaacacacacacacacacacacacacacacacacacacacacacaccggtcaGACTCCTCATATTCTTCTGAATGGACtgcctcaacacacacacacacacacacggataca

Function

symbol description
nucb1 Predicted to enable calcium ion binding activity. Predicted to be located in Golgi apparatus and extracellular region. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human NUCB1 (nucleobindin 1).

NR:

description
nucleobindin-2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20371 NUCB; nucleobindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310055.1 True 1632 mRNA 0.55 13 1890285 1903186

Neighbor

gene id symbol gene type direction distance location
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 20115 1854742 ~ 1870170 (+)
zgc:195001 LOC108274956 coding upstream 50947 1828671 ~ 1839338 (+)
emc10 emc10 coding upstream 64217 1816311 ~ 1826068 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 166487 1678312 ~ 1723798 (+)
med25 med25 coding upstream 231989 1631072 ~ 1658296 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 109047 2012233 ~ 2061070 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 181366 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 189373 2092559 ~ 2114069 (+)
grna NA coding downstream 227342 2130528 ~ 2174611 (+)
LOC117598829 NA coding downstream 252413 2155599 ~ 2155849 (+)
G203898 NA non-coding upstream 18725 1856423 ~ 1871560 (+)
G203867 NA non-coding upstream 23274 1772629 ~ 1867011 (+)
G203885 NA non-coding upstream 64992 1824978 ~ 1825293 (+)
G203672 NA non-coding upstream 323656 1565356 ~ 1566629 (+)
G203662 NA non-coding upstream 357240 1522226 ~ 1533045 (+)
G203906 NA non-coding downstream 2653 1905839 ~ 1922479 (+)
G203913 NA non-coding downstream 15837 1919023 ~ 1987215 (+)
G203935 NA non-coding downstream 105215 2008401 ~ 2008606 (+)
G203955 NA non-coding downstream 251250 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 294927 2198113 ~ 2198333 (+)
ccndx LOC108280826 other upstream 770 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 270311 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 528825 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 653083 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 833951 1034336 ~ 1056334 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 14019 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 274497 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 964582 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 1100422 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1289518 3192704 ~ 3200133 (+)

Expression


Co-expression Network