LOC113546924


Basic Information

Item Value
gene id LOC113546924
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23147197 ~ 23156708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310058.1
GACATCTTTTAAAGAAGACCTTCCTTGCTACCTGCTTCTGACTACTTTCTTGTTAAGAGCAAGATGATGTCATACCTGGCAAAGATTGTTGAAGTTGGTGGGAACGAAGGAagtgcttttaattttaatggtaCTGAAAATGGAACCATGTTGAAAAAGATCACGGTGTGGGTCGGTAAAAAGAAGGTGAAAGCCATTAAAGTTCAGCTTACTGATGACCAGTCTGAGCAGTTTGGTGTACTTGATGGGAAAGTTTCAGAATTCACATTTGAAGATGGAGAGAATTTCACCTCCCTTTCACTTTGGGAAAATGGAGATGGAACACGTCTGGGTGGCATCAAATTCAAGACAAATCACTCCCGGGAGTTCTCAGCAAGCATGAGCATCTTGAATTCAAAATCAGTAGTTCCAGTTGATGTTGCTTCTGGGATCTGCATGGGAATCAAAGGACGTGCAGAGATGTCCAAAAGTCCGGGGATTAGTTCCTTAGGCTTCATGTTCATTAACACCATCAAGTCTGCTGAGCTTACAAATGTTGAGTATCCCACACTTCATGATGTGATACCCAAAGTAGCTGTCAGGGAAATCAAATCCATGACCTACCAGAATAACACTACTAAAACTCAAGAATATAGAATTGAAGCCTCCAAAAAAATCACCCAGACATCCTCCTGGTCTGTTACCGGCAGACTGGAATTCATGGTCAGCCTGGAAGTTAAGGCAGGAATTCCATTAATTGCAAATGGCACAGCAAGATATGAACTAAAAAAGGGAGTTGTGGGTACATATGCTTCGGAGACCACTGAAGAGAAAATGAAGCTCTTcttgtttcctgttaaagtccgtCCAGATACATCCGTGGATGTGGACATCACAATTGGCCAGGCTACAGTTGATCTTCCCTTCAATGGCATAGTCAAGATTACCTGCCATAATAACAGTGTGCTGCAGTTTAAAACCAGTGGAACCTACAAGGGTGTCACTTATACTGATGGAAAAGTAGCTGTGAATGAATCAGCCAAAAAGCTTGATGGGGCCTCACAGGCTTTGAACTAAATTGTAAAAATGGTTCTAAAAGTTCAGTATAATGAATCTCATATATTAGATCATTCaaactgaaaatgtgtttgACGCTAGCTTGGTTTAAATgatttggttttattattagcttttcATAATCATAATGATTCTCttgtctgatttgtttttttcataatcTGTAAACCTTTTAAAACAGTGACTTCATTTATCCTGCTAGGCTTCCAGTGGTGCAGACCCATATTTtttgattaataaaacattctttaaaaaacattcTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310058.1 True 1321 mRNA 0.39 2 23147197 23156708

Neighbor

gene id symbol gene type direction distance location
LOC113546949 LOC108277208 coding upstream 3437 23141714 ~ 23143760 (+)
pdlim7 pdlim7 coding upstream 321964 22781366 ~ 22825233 (+)
rnf44 rnf44 coding upstream 392765 22733735 ~ 22754432 (+)
cckb LOC108274239 coding upstream 525217 22614859 ~ 22621980 (+)
LOC113546929 NA coding upstream 598331 22537502 ~ 22548866 (+)
LOC113546950 NA coding downstream 3755 23160463 ~ 23163243 (+)
LOC113546948 LOC108277208 coding downstream 11636 23168344 ~ 23170849 (+)
atoh1b LOC108277232 coding downstream 126540 23283248 ~ 23285620 (+)
LOC113546963 slc39a8 coding downstream 186253 23342961 ~ 23355343 (+)
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding downstream 301095 23457803 ~ 23554508 (+)
G215479 NA non-coding upstream 111538 23035455 ~ 23035659 (+)
G215476 NA non-coding upstream 119578 23026443 ~ 23027619 (+)
G215425 unc5a,LOC107677380,LOC107595741 non-coding upstream 217400 22929488 ~ 22929797 (+)
G215350 NA non-coding upstream 238119 22841344 ~ 22909078 (+)
LOC113546955 NA non-coding downstream 74810 23231518 ~ 23298835 (+)
G215638 fam193b non-coding downstream 158461 23315169 ~ 23315568 (+)
G215637 fam193b non-coding downstream 160118 23316826 ~ 23317147 (+)
G215656 NA non-coding downstream 162037 23318745 ~ 23319138 (+)
G215664 NA non-coding downstream 199483 23356191 ~ 23359559 (+)
G215347 NA other upstream 311295 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 366621 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 377561 22765814 ~ 22769636 (+)
LOC113546930 LOC108275153 other upstream 656286 22463100 ~ 22490911 (+)
LOC113546919 LOC108278588 other downstream 574746 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 585774 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 737539 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 882200 24038908 ~ 24330000 (+)
G216197 NA other downstream 1300362 24457070 ~ 24458004 (+)

Expression


Co-expression Network