mcm5 (mcm5,LOC107703892,LOC107670920)


Basic Information

Item Value
gene id mcm5
gene name mcm5,LOC107703892,LOC107670920
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11635325 ~ 11642057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310071.1
CAAGAGTTTTACCGCGAAAATAGTAGCGTGGCAGGCATTTTGTGTGAGTGCGCGTGAGGAGATATATTGTGCATCCAGCGAACAGAcgtttattaatatatatattttttatttataaataagtgACTTGCGCTTAAAGCAAAGGAAAATGTCTGGATTTGACGATCCTGGAGTTTATTACAGCGACAGCTTCGGCGGAGGAGAAGGCATCGGGGATGAAGGGACTGTGAAACGCAGTCAAATCAAAAAGCGCTTTCGGGAGTTCCTCAGACAGTTCAGGGTCGGCACTGATCGCACCGGCTTTACCTACAAATACAGAGATGAGCTCAAGAGGCACTACACTCTTGGAGAGTACTGGATCGAGGTGGAAATGGAGGATTTGGCCAGTTTTGATGAGGATCTCTCAGACTGTCTGTACAAGCTGCCCACAGAGAACCTGCCTCTGCTAGAAGAGGCAGCGCAGGAAGTTGCTGATGAGGTCACGCGTCCGAGGCCAGTAGGAGAAGAGACGGTGCAGGACATCCAGGTGATGCTGAAGAGTGATGCCCATCCTGCATCTATTCGCAGCCTGAAGTCTGAGCAGGTGTCCCGTCTGGTAAAGATCCCTGGTATCATCATCTCCTCCTCAGCAGTGAGGGCAAAAGCCACACGAGTGTGCCTGCAGTGCAGAGGGTGCCGTGCTGTCATCAGTAACATTCCTCTGCCACCCGGCCTACAGGGCTACGCTTTGCCCCGCAAGTGCAACACTGAGCAAGCGGGTCGTGTGAAGTGTCCTGTGGATCCCTACTTTATCATCCCAGACcggtgcgtgtgtgtggacTTTCAGACTCTGCGGCTGCAGGAGTCACCGGATGCTGTACCTCATGGAGAGATGCCGCGACATATGCAGCTTTACTGTGACCGgtacCTGTGTGACCGTGTAGTGCCTGGGAACCGAGTGACCATCATGGGCATCTACTCCATTAAGAAAGTGGCTCAGCCCAAGAGCAAAGGTCGGGATAAGGGGGCTGGCGTGGGCATCCGCTCTGCCTACCTACGTGTAGTGGGTATTCAAGTGGACACAGAGGGAGCGGGTCGAGGAGCCACTGGATCAGTATCCCCTCAGGAAGAGGAGGAGTTGCGGACACTGGCTGCTTCCCCCTCCGTCTATGAATCCATTGctcgctctctcgctccctcCATTTATGGCAGTGACGATCTTAAGAAGGCCATTGCTTGTCTCCTGTTTGGGGGCTCCAGAAAGAGgtTGCCAGATGGTCTTACTCGCAGAGGTGATATTAATCTGCTGATGCTTGGAGACCCTGGCACAGCCAAGTCTCAGCTGCTAAAGTTTGTGGAAAGATGTTCTCCTATTGGGGTTTATACCTCAGGAAAGGGCAGCAGTGCAGCTGGTCTGACGGCGTCTGTGCTCCGAGACCCAAACACACGCGGCTTCATCATGGAGGGTGGAGCTATGGTGCTGGCTGATGGGGGTGTTGTGTGCATCGATGAGTTTGACAAGATGAGAGAAGATGACAGAGTAGCTATTCATGAAGCGATGGAGCAGCAGACTATCTCTATTGCCAAGGCTGGCATCACTACCACTCTGAACTCTCGATGTTCTGTGCTGGCGGCTGCTAACTCAGTGTTTGGCAGATGGGACGACACAAAGGGCGAGGACAACATTGATTTCATGCCCACAATCTTGTCCCGTTTTGACATGATCTTCATCATCAAGGATCAGCATGACCAGCAGAGAGACATGACCCTGGCTCGTCACGTGATGAACGTGCACCTCAGTGCTCAGACGCAAACGGAGGGGGTGGAGGGAGAGATTCCTTTGGCCACTTTGAAGAAATACATTGCTTATGGCAGAGCGAAATGTGGACCTCGCCTGTCTGCGGCTGCAGCGGAGAAGCTGAAGAACCGCTATGTGGTGATGCGGAGTGGTGCGAgggagcatgagagagagagcgatcgTAGAGCCTCTATCCCCATCACTGTCAGGCAGTTGGAGGCAGTTGTACGTATCGCTGAGTCCCTGGCAAAGATGAAGCTGCAAGCCATAGCTGGAGAAGAGGAGGTGGATGAGGCTCTTCGACTTTTCCAGGTGTCTACTCTGGATGCCGCACTGTCTGGTAGCCTGTcagGTGTGGAGGGTTTCACCACCCAGGAGGATCAGGAAATGATCTCCCGCATTGAGAAGCAGCTAAAGAGGCGTTTTGCCATTGGCTCTCAGGTGTCTGAGCACAGCATTGTACAGGACTTCACCAAACAGAAATACCCTGAGCATGCCATCTATAAGGTCCTTCATCTGATGCTGAGGAGAGGAGAACTCCAGCACCGCATGCAGAGGAAGGTGCTTTACAGGGTTAAGTAGATGAGGActgcctgtgtatgtgtatgtatggttgcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgataaatatcattaaaataaatttaaggCACATTGAGCATCTTTCTGAGAATGCTTCCTCAAACGAAAATGTGTCACCTTATGTAAATAGTTCAGTGTCTTTTGcgcacttttctttcttcaataTCAGACTGTTGGTTATTTTTGGGCTGTAAACCATCATTTTTAAGACTGATTAATCCTAGCTGTGGCACAAATACACTATGTGGTTTAAAGATTGTTCTTTTTACTGTTTGTCATCAGACTCTTGTGCAAAATAATGCTATTAATCTCCATGTTTGTGATAATGAGGTTTAAAGCTGAGGGCATCCTCAGTGATAGtcataatgttttttgtttaggAACAAGTGATAATAAAGCATTGGGAAATGTTACGTGA

Function

symbol description
mcm5 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to 3'-5' DNA helicase activity and single-stranded DNA helicase activity. Acts upstream of or within chordate embryonic development; mitotic cell cycle; and negative regulation of apoptotic process. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; head; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 8. Orthologous to human MCM5 (minichromosome maintenance complex component 5).

NR:

description
DNA replication licensing factor mcm5-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310071.1 True 2813 mRNA 0.49 16 11635325 11642057

Neighbor

gene id symbol gene type direction distance location
gcat gcat,LOC107703894 coding upstream 1652 11626282 ~ 11633673 (+)
si:ch73-281f12.4 LOC108278921 coding upstream 33913 11578560 ~ 11601412 (+)
unm_sa1261 unm_sa1261,LOC108274299,LOC108432226,LOC107726818,LOC107573384,LOC107674909,LOC107717497 coding upstream 74496 11538334 ~ 11560829 (+)
LOC113528662 NA coding upstream 98160 11537047 ~ 11537165 (+)
atp5pd atp5h,LOC103042933,LOC103361245 coding upstream 99633 11531521 ~ 11535692 (+)
foxred2 foxred2 coding downstream 6092 11648149 ~ 11657127 (+)
ankrd54 ankrd54,LOC107728844,LOC107563363 coding downstream 15472 11657529 ~ 11662120 (+)
hmgxb4a hmgxb4 coding downstream 20164 11662221 ~ 11671601 (+)
si:dkeyp-69e1.8 LOC108278349 coding downstream 29649 11671706 ~ 11677461 (+)
s1pr5a s1pr5a,LOC108260797,LOC108432217 coding downstream 97563 11739620 ~ 11743073 (+)
G209392 NA non-coding upstream 844 11633912 ~ 11634481 (+)
G209390 NA non-coding upstream 17091 11618035 ~ 11618234 (+)
LOC117598771 NA non-coding upstream 653032 10971721 ~ 10982293 (+)
G209069 tbl3,LOC107724722,LOC106601810 non-coding upstream 687784 10943255 ~ 10947541 (+)
G209067 NA non-coding upstream 702897 10932059 ~ 10932428 (+)
G209410 NA non-coding downstream 66671 11708728 ~ 11708936 (+)
LOC113528367 NA non-coding downstream 166204 11808261 ~ 11822910 (+)
G209775 NA non-coding downstream 377806 12019863 ~ 12021132 (+)
G209798 NA non-coding downstream 419512 12061569 ~ 12061782 (+)
G209863 NA non-coding downstream 491203 12133260 ~ 12133471 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 57502 11567119 ~ 11577823 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other upstream 247305 11280080 ~ 11388020 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other upstream 853866 10349402 ~ 10781459 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other upstream 1647552 9944306 ~ 9987773 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 2571912 9061563 ~ 9063413 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 407350 12049407 ~ 12086058 (+)
LOC113528416 LOC108275780 other downstream 493212 12135269 ~ 12140371 (+)
arhgap17b LOC108279379,LOC108432202 other downstream 516646 12158703 ~ 12190070 (+)
ndufb10 ndufb10 other downstream 725509 12367566 ~ 12374372 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other downstream 1793324 13435381 ~ 13445686 (+)

Expression


Co-expression Network