zgc:55558 (zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945)


Basic Information

Item Value
gene id zgc:55558
gene name zgc:55558,p-ras,LOC108258948,LOC108413997,LOC107653435,LOC103023536,LOC107567516,LOC105894964,LOC103374945
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 6937554 ~ 6944028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310098.1
TGGCTGGTTATGTTTATAGTCCCGCCCCTCCTCGCCCACAATGAAGTAGGGAGAGTCTTAGCCAAGAAGAGCTAAATAGAACGCGGGGTTGAAGTTATAAATATTTCCAagGATGACTGAGTACAAGTTGGTGGTAGTGGGAGCAGGAGGCGTTGGGAAAAGTGCACTCACTATCCAGCTCATTCAGAACCACTTTGTGGATGAATATGACCCCACCATTGAGGACTCGTACAGGAAGCAGGTGGTGATCGATGGTGAGACGTGTCTCCTGGACATCCTGGACACTGCAGGTCAAGAGGAGTACAGTGCTATGAGGGACCAGTACATGAGGACTGGCGAGGGCTTCCTCTGTGTGTTCGCCATCAATAATATAAAGTCTTTCGAGGACGTGCATCTCTACAGGGAGCAGATAAACCGGGTGAAGGACAGTGACAATGTTCCGATGGTGTTGGTGGGGAATAAAAGTGATCTGAGCTCTCGCTCAGTGGAGACACGTCAAGCACAAGAGCTGGCTCGGGGATATGGCATCCCATTTGTCGAGACGTCCGCCAAAACGCGACAGGGTGTGGAGGAGGCTTTCTACTCTCTGGTTCGGGAGATCAGGAGATACAAGGAGACAAACCGCAGCAACAAGAAGAGCAAGAAACACCCACAGAGACGTTGCACTCTTTTATAGCAATACTTCTGCCCTCTCTTGCACTACATTCCTGGAATagcactgtgcacacacacacacacacacacctgcacactcTGCTGTAGCATTTCAACCCTTCTCCCTCCACTTAGAGCCAACTTAGGGTGAGGTCCCAATCAGGAAGCTCAGAAACAGTGCCATGGCTGCTATatgctgttttttcttcttctttgcagTGGGTATATATGGCTCGCCAAATGCAGAGGTTCCTGCTTGGGgctttaaatattgtaaaacttTAGCAAGATTCATGAGTCATTGGACTTGTTTGGATAACTGTTATCCCGCCATGTCTGTGCTCTGACTATGGCCACTGATTTCTGAAATTGTGACTTTTTGTAGCATTCACGTACTTCAAAATCTCCAGCTCACCTCAACTTTTAAACACCGTGACTCTCAGTACAAGTGTTAATGTTCTCAGCTGAGCTAGTGCCCTACCTGTAACCACTATGAATTTGTGCTTGAAAGGTAGCTATGCAGTGTCATACGCcaccccccaccaccaccaccaccaccaccgaGTCAAGTTcaagctgctctctctctctctctctctctctctccctctttctccctaCACAAGCACTGCTCTCTCCTGTGTTCGTACACCACTGCTGTCTCTGCCTCATTCACAGGTCTTCTATACTGCGAACAAGGCTAGAGAAATGATTGTATTCCCTCACTTTCATTGTTATAAAGGAAGAAATAATGCaggatacattttatttttaagcaggCCCACATTGGGGTCTGAACACCTCTGATACATTCCTGTTGTCATAGCGATGAGACAGCCTTAGGAGTTTAATGggattttgttaattaaaaggATTTTGGCTAAAA

Function

symbol description
zgc:55558 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; pleuroperitoneal region; and trunk musculature. Orthologous to human ERAS (ES cell expressed Ras).

NR:

description
PREDICTED: GTPase HRas-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07827 KRAS, KRAS2; GTPase KRas

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310098.1 True 1540 mRNA 0.47 6 6937554 6944028

Neighbor

gene id symbol gene type direction distance location
gys1 gys1,LOC108414029,LOC107653402,LOC107690304,LOC107731036 coding downstream 20559 6899007 ~ 6916995 (-)
tmem86b LOC108256452 coding downstream 46631 6888662 ~ 6890923 (-)
stk17al LOC108258001 coding downstream 76647 6846895 ~ 6860907 (-)
atp6v0a1a atp6v0a1,LOC107567567,LOC105890791 coding downstream 117185 6794354 ~ 6820369 (-)
cavin1a ptrf coding downstream 144019 6773433 ~ 6793535 (-)
slc17a7a slc17a7a,LOC108260804,LOC108413988,LOC107731050,LOC107754185,LOC107653427,LOC101069507,LOC100693903 coding upstream 10085 6954113 ~ 6978133 (-)
slc6a16a LOC108260811,LOC107568576,LOC107690307,LOC108413965 coding upstream 36512 6980540 ~ 7002180 (-)
kcnj12b LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486 coding upstream 114941 7058969 ~ 7067348 (-)
LOC113528017 NA coding upstream 191309 7135337 ~ 7146912 (-)
rpl19 rpl19,LOC108260855,LOC107084780,LOC108413899,LOC101075516,LOC107378566 coding upstream 273554 7217582 ~ 7225228 (-)
G206923 NA non-coding downstream 109408 6826368 ~ 6828146 (-)
G206924 NA non-coding downstream 111794 6824896 ~ 6825760 (-)
G206649 NA non-coding downstream 591191 6273816 ~ 6346363 (-)
G206628 NA non-coding downstream 733358 6203312 ~ 6204196 (-)
LOC113527891 NA non-coding downstream 747628 6187474 ~ 6189926 (-)
G207057 NA non-coding upstream 158220 7102248 ~ 7102389 (-)
G207198 NA non-coding upstream 232504 7176532 ~ 7176755 (-)
G207221 NA non-coding upstream 283357 7227385 ~ 7227664 (-)
G207226 NA non-coding upstream 293645 7237673 ~ 7237881 (-)
G207227 NA non-coding upstream 296213 7240241 ~ 7240907 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 211389 6646058 ~ 6726165 (-)
G206604 NA other downstream 742558 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 976504 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 986557 5940862 ~ 5950997 (-)
G206282 NA other downstream 1096077 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 374575 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 481689 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 615739 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 1305857 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1335739 8279767 ~ 8289808 (-)

Expression


Co-expression Network