lasp1 (LOC108258608,LOC108413872,LOC107689048,LOC107745925,LOC107552489,LOC107567378,LOC107754308)


Basic Information

Item Value
gene id lasp1
gene name LOC108258608,LOC108413872,LOC107689048,LOC107745925,LOC107552489,LOC107567378,LOC107754308
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7274904 ~ 7290380 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310102.1
GGTGTCGTGCCCGCGCTTCCGCGCGCGTCTGCTCGCTCGGTGACAGACAGCGGTGCAAAACATCACAAGCCGCCGCCTGCACTGGATTTCTTGCTCAGATACCTGCCCGATTCTCACGCATATAATAACGAAGCATTAGCCTAGGGCCTCTGttctaatctttttttcatttcatctgtCGCGTTAAGATTGTTTGAAAATGAATCCGCTGTGTAGTAGATGTAACCGAGTCGTGTATCCTACGGAAAAAGTGAATTGTCTTGACAAGtTCTGGCATAAAGGATGTTTCAGCTGTGAGGTATGCAAGATGACTCTAAACATGAAGAATTACAAAGGCTTTGATAAGAAACCATACTGCAATGCacacTACCCGAAAACGTCATTCACGAGTGTTGCTGACACTCCAGAAAACCTACGCCTGAAACAGCAGAGCAAGATGCagagccagGTGCTCTACAAGGAGGAGTTTGAGAAGAACAAAGGAAAAGGCTTCAGTGTTGTAGCTGACACACCAGAGTTGCAGAGAATTAAGAAAACACAAGACCAGATCAGCAACATTAAATATCATGAGGATTTTGAGAAGAGTAAAATGGGAGGAGAAGTTCACCATCCACCACCGCAACAAAGCACAACTCCAGCATATCAACCCCCAGCTGCATCGCAGAACTACCACTATGAGCCAGAACCAGTGCGCCAAGCTGCTGCAGCTCCTCCGCCCAGCTCTGGGAAACGTTACCGGGCAGTGTATGACTACGCAGCAGCTGATGAGGACGAAGTGTCATTCCTCGACGGAGATGTGATTGTGGATGTGCAGCCGATCGATGAAGGATGGATGTATGGAAGAGTGGAGCGTACTGGTCAGCAGGGCATGCTGCCTGCTAATTATGTGGAGGCCATATGAGAAAGTAAACAAGAATGGGatagagggagatggagagaaagggaaaatgagagagagagagagaaatggataaCAGGAGGCCCAGTGCCATTCCATATTTTAAGagctattttcttttccttgtcTGTGCTTTCTTATTAATGCGCCTATGCTGATAACTCATacaaaacacatgcatacaaaAATGCACTCCCACAATTATATAGTGtagacatacatacacattgtGTATAGCCATGTCTTGCTCTAcctgctctgtttctctctgctccCTCTTAGCTCTTGCTGTCTGACTGTCTACCTTGTCTTGTTTTTCAGTCTTGGAGAGGTGCTGTCACAAGTGGCACTTAACGTCTTaatgacacacattcacacccaaACAGAcctctgaatttttttcaagGCTGCTTTATAGCACTTCGTGAACAGACAACCTTAGCCATGTCAGTCATTCCACACTTGCCATGACAATGAGaaccttttccttttcctgaaCTTTTTGCAGCCTGTCGCTAGTTGTAGCTATCATTCTAGCCCATGTGGCATCTCAATGGTTGTGCAGTAGTAATGATGCTTGAACATGAGACTTCTGATCATTCCATTTGTTCCACTGAGTCTTAAAGCGTATCCATCAGACCTCATGGGTATTGTAGTGAAACTGGAatacatgtgtatataaaaaGATCCTCTTACTGTGGCATCGGTTTGTGTATGGGTGTAGCGTGACTGGTGACCCTGCTCACAAGGCAGTGTTTTCATCATCTCCTTCATATGTAACACTTCATCTCTGTGCtttcatataaaacatatatgttctagtctttttttttttttttttgctgcacagACTTACTATGTAAAGGTAAAGCGGTGTTCTCTACTCTTCATAAAAGCAAAAAGTAGACCCATAGCACTCACCACTTACCTGAGAGCAGAACTGGAGAACCAGTGAGAGGGAAGGAGGAAGCACAATTCTGTGGACCATTTTAGTGGGTTTTTTGTCTCGACACCGATTAAGCCTAGTCCTGGACTAAATATCACTGTTAACTTCCTTGTGAAAAATGCTTTAGATTCGTAGACTATGCTAAATCTGTGCCTAAGAACTATCCCTATATATGttttaactttttcttttagttttgtTCAGGAACATTCCATGTGCATTGTATGATAATGTATCTCAGCATGTACCTCTGCACTATTCTTTATGAAGTTATTGGGTTTTTGCCCCTCTCATCATTTGCTTATTCTCATTACCTTGTTCGTATTGTATGAGCCGGATTTGTAATGTCAGTTAATCAATATCAGTGGAATAAAACAGATCTATTTGTATATCAAGACAGGCCAGTTTGTCACTAGAGACAATATTCTGAGCTTTTGAACCTCTAACATATCATACTGCACCCTATTTAGAAATAAGAACAATTCTTATTTTGCTGCTTATAGTGTGCAAACTACACTGAATGTCACATAAGAGATCCAGCATATatgttcaaaacaaaaaaaaaagatttaacatGAACCTTTTTTATTTCACGTGATCAGATGTTGAATGTGATCTTGTCTCATTACCTTAAATAAGAACAATTCAAAGTG

Function

NR:

description
LIM and SH3 domain protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24420 LASP1; LIM and SH3 domain protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310102.1 True 2497 mRNA 0.42 7 7274904 7290380

Neighbor

gene id symbol gene type direction distance location
trnac-gca_18 NA coding upstream 2373 7272460 ~ 7272531 (+)
arl5c LOC108260527,LOC107754318,LOC107670909,LOC107567387,LOC107745936,LOC107689047,LOC108412527 coding upstream 6991 7263146 ~ 7267913 (+)
cacnb1 cacnb1,LOC108413880,LOC106607253,LOC107552492 coding upstream 15041 7227341 ~ 7259863 (+)
LOC113528018 NA coding upstream 59969 7203627 ~ 7214935 (+)
LOC113527945 NA coding upstream 81004 7178717 ~ 7193900 (+)
trnac-gca_21 NA coding downstream 9233 7299613 ~ 7299684 (+)
atp6v0ca vatl,LOC108413863,LOC106517404 coding downstream 12043 7302423 ~ 7305900 (+)
mrps34 mrps34,LOC107567325,LOC107670906 coding downstream 33580 7323960 ~ 7327094 (+)
nme3 nme3,LOC107661191 coding downstream 37740 7328120 ~ 7334236 (+)
cramp1 cramp1 coding downstream 98695 7389075 ~ 7407151 (+)
G207025 NA non-coding upstream 216085 7054386 ~ 7058819 (+)
G206955 NA non-coding upstream 272736 6930320 ~ 7002168 (+)
G206942 NA non-coding upstream 343518 6898842 ~ 6931386 (+)
G206835 ptrf non-coding upstream 464551 6730685 ~ 6810353 (+)
G206801 NA non-coding upstream 537057 6689456 ~ 6737847 (+)
G207084 NA non-coding downstream 4105 7294485 ~ 7296973 (+)
G207111 NA non-coding downstream 27647 7318027 ~ 7318360 (+)
G207140 NA non-coding downstream 95636 7386016 ~ 7388543 (+)
G207155 NA non-coding downstream 149697 7440077 ~ 7440281 (+)
G207157 NA non-coding downstream 152689 7443069 ~ 7443753 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 142937 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 172689 7084441 ~ 7102215 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 1014047 6252344 ~ 6260857 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 1079940 6180096 ~ 6194964 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 1099538 6160334 ~ 6175366 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 18827 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 562811 7853191 ~ 7853509 (+)
trnas-cga_1 NA other downstream 717806 8008186 ~ 8008411 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 1660086 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1771183 9061563 ~ 9063413 (+)

Expression


Co-expression Network