trpm4a (LOC108280300)


Basic Information

Item Value
gene id trpm4a
gene name LOC108280300
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 457705 ~ 481434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310147.1
atgtCCGTCTGTCCATCCGCACGCTCTCTCAAGTTTGCCGGCATCGCTCGCAgacaaagTCAGTTCCTGCGTCTGTCATGCGACACTCCCGCTTCGCTCGTCTACGCCATCCTGACTCAGCACTGGGGTCTGCCGCCTCCCAACCTGGTGGTGTCGGTGGTGGGGGGCGTCGGCCAGGAGAAGGTCAGGAGCTGGGTACGAGAGGTGGTGAGACAGGGGCTGGTGCGAGCCGCACAGAGCACAGgtgccTGGATCGTGACGGGTGGGCTGAGGGAGGGCGTGGGCCGCTGCGTCGGCGAGGCGGTCAGGGATCACGGAACTGCGGCTGCGTCTCAGTCCAAAGTGGTGGCTCTGGGCGTGGCCCCCTGGGGCCTGGTGGCCAACCGACATCAACTCGTCAACGCTGAGGGCAGCTTCCCGGCCAGATATTATGTTCAGAACACGTCACGGGACTCGTGTTACCTGGACAGTAACTATCAGGCCTTCCTCCTGGTGGATGATGGGAGCGTCGGCCGCCGGGGTGGAGAGACGAGCTTCATAACCAACCTGGAGAAATTCATCTCTCATCAGCGCACCGGGATCTGGGGCAGTGGGAGTATCGAGATCCCTGTGCTGTGTATGCTGATTTCTGGCGATGCGTCTGTGCTGAAGAGGATGGACATGTCTCTGAAGAAGACCACGCCCTGGTTGGTGTTGAACGGTTCGGGTCCTGCGGCGGACATGATCTCGGAGCTGCTGAGTGACCTGAGCCGTGCGGCGTCTCCAGTGGACGGTGAGGGCAGAGACAGCTCCAGCTTCAACCACGAGCTCAGAGACCGAGTGCGAGAGATCATCAAGAAACATTTCCCCTTGGAGAAAACGCTGGAGAAGCTGGTGGACCAGgCTCTGAGTATCTATCAGAAAAGATCTCTGATCACGGTGTTCCACGGGGAACAGGACAGTCCTGATGATTTCGACACGGTCATCCTGAGAGCCCTGGTGCGAGccAGTAAGCAGGTGAACAGTAACTCCAGTGAGTACACAGAGGAGCTGAAGTTGGCCGTGGCCTGGAACAGAGTGGACATCGCAAAGAGCGAGCTGTTCAACGGCGACATCCAGTGGAAGtatGATGATCTGAAGGACTCCATGACGGATGCTCTGGTGAACGATAAGCCTCAGTTTGTTCGTCTCTTCACTGAGAACGGTCTGAACATTCTGGAGTATCTGACGTATGAGCGTTTGGAGAGTCTGTACCAGTCTCTCTCCAGCAGCACGCTGGCCTACACCCTGCTGCAGACGTGGCTGAGGGAGAGACACAGCCTGGCCTCCTCTCAGACCTGCTCTCCCGACTCGGACGGCGGGAACTGCAAGGGCCTGAAGAGTCCCGTGACGGGGCCGTCGAGCGCCCGCGGGCTCAGCCTGTTTGAGGTTTCACGGTTATTGGGGGAAGTTTTCGGAGGCATGTGCCAGCCGTTTTATTACGTCCCCCTCGGCCTGGAGCCTGGAGTGAGCTTGAGGAAAGCAGCAAAGcatgtGAATAAGATTCTGCAGGGTGACTGTGCGTATCGTCATCAGCAGGTTGCGTTCCCCTGGTCCTCTCTCTTCATCTGGGCCATTCTGCAGAACCGCAGTGAGATGGCCATTTTCTTCTGGGAGATGgcGGGCGAGTCTGTAATGAGCGCGCTCAGTGCGTGTAAGATCCTCCGAGAGCTGTCCAAGCTGGAAAACGAGACAGAGACCTGTTTGTCCATGAAGGACCTGGCGCAGAAGTTCGAGATCCTGGCTCATGACATGTTTAGCGCCTGCTGCCAGAGCAACGAGACTCGCTCCCTCACGCTGCTCATAAGGATGTCCCCGTTTTGGGGCGGAGCTACGTGTCTACAGATGGCCACGGCGGCCGACGCACGACTCTTCTTCAGCCATGACGGTGTGCAGACTCTGCTGGCTCAGATCTGGTGGGGTGACATGCACAGCCGCACTGAAGTGTGGAAACTCATCATGACGTTCTTCCTACCTCCTCTCATCTACACCAACCTCATCACCTTCAGagAGCATCAGGAGAGACACAAAGATGGTTTGGAGGGGTCGCGCACCGTAGCGTTCTCTCTGCCTGATATCACACAGCACATggatGATGACATTAAATTGGAGGATAACGCTCACGGTGGAGAAGGGGACAATGTCGACGGCAGTCACATCTATTctctcactgacatcacacacacGGATGAGGATCTGGAGGAACACACTGCCTTAACCAAAGACTATAAAGggAAACATGCTTCTGTCCACAAACACCCGTACGTCGTACACCGATGGCGGCAGTTCTGGTTCGCGCCCGTCACTTCGTTTCTAGGCAACGTGCTAATgtacttcctcttcctcatcctatTCGCTTACGTCCTATTGGTCGAATTCAAACCTCCGCCTCCGGTTGGCCCCGCCCCCATTGAGTATTTGTTGTACTTTTGGGTGTTTACTCTGGTCTGTGAGGAGATTCGACAGTCTTTCGTCAGCggctcagggagtttttctcaGAGTATGGAGTTGTACATCCAGGACATGTGGAACAAGTGCGACCTCACGGCCATCGTCCTCTTCATCCTCGGCCTCatctgcaggatgTTCGACTGGTCGTATGAGTTCGGTCGCTCGGTGCTGTGTGTGGACTACATGGTCTTCACTCTTCGACTCATTCACATCTTCGCCGTTAACAAACACCTCGGACCCAAAATCATCATCGTCGGcaaaatgGTGAAGgatgttttcttcttcctgttcttcCTGGGAGTCTGGCTATTGGCTTACGGCGTGGCCAATCAGGCGCTGATCTACGCCTATGACCCTCGACCTTACTGGGTGATTCGCAGAGTTTTCTACAGACCGTACCTGCACATCTTCGGGCAGATCCCACTGGATGAAatagatgCTCATAAGCGTATACAGAAGGTTTGCACCAACAACGTGACTCTGATCCAGCAGGGAGCCGAACCGTGTCCGCAGTCAGAAGCCAACTGGCTCGTCCTCATCCTGCTGTCCATCTACCTGCTGGTCACCAACGTCCTGCTGCTCAACCTCCTCATCGCCATGTTCAGctaCACGTTCAGTAAGGTACAGGAGCACAGTGACGTTCACTGGAAGTTCCAGCGCTATAACCTGATAGTGGAGTATCACTCTCGCCCGTGCCTGGCTCCGCCCTTCATCATCCTCTCTCACCTGCGGCTCTTCATCAAGAGAACCATCCGCAAAGTTCCTTCTGTCAAAATCAAACACTTCAtgttggATCTGAGAGGTAGGAAGGCGAGCAGGTTGAACACGTGGGAAGCGGTACAGAAGGAGAATTTGCTCTCGACTCAGAGTAAGAAGCTCAGAGACAGCGACACCGAGCGACTCAGACGCACGTCTGCCAAggtggaCAGCATGCTGAAGCAGATGGCAGAGATTCGAGATCAAGACCGCAGATTGAGAATGCTGGAGTCTGAGTTGGAGTACTGCTCTAGCTCCCTCTCGTGGATAATGGAAGAACTGGCGCAGAGTGACCTGATCAAACACACCCGTCGCCCCCCCGTCCACCGAGAGTCGGTCCCACCAACTTCTCCCACATGAGACAACAGCAAACAGACGAGTCTCCAAACCAAAGGAGCTTCTGGATTTCCTTTTGCACAAACATGTCAAAGATgaagttgatgatgatgatgatgatgatgatgatgatgatgatatctccctttctgaaaaaaagactTGCAGTTGTGGGAGAGAAACATGTTTCACCGACACTCTTGCATttcaatgttgttttttttttataataaacaccAAATATGAAAACCTCAGTGTTCCTGCTCACATGTCTGACAGGATCACAACTCAGTTCAGTCACATCTCAGAACAGATCTGTAAAGATGTCCAGACtctcccttcttctttttttaatatatatatgatttgtattttattttttatagatttCAGTTGAGTCAGTTAATGAAACAGTGATTACAGgtgaaatgtaatgtaaaatctgttgtttgttttgtaggGGAATGTGATTCAAGGGTCTTTAAAAGCTCTCATATGTGTTCTGAGTTGCATTAGATGTTTTCTATGagttgatttttaaattttctaaatataaaaatcatttgaTTATTACGCTTCA

Function

NR:

description
transient receptor potential cation channel subfamily M member 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310147.1 True 4141 mRNA 0.53 27 457705 481434

Neighbor

gene id symbol gene type direction distance location
scaf1 scaf1,LOC107658492,LOC107583012,LOC105925210 coding upstream 20811 423846 ~ 436894 (+)
LOC113525002 LOC108280599 coding upstream 36480 418751 ~ 421225 (+)
prr12b prr12,prr12b,LOC107729421,LOC107658420,LOC107730729,LOC107689691 coding upstream 53414 370566 ~ 404291 (+)
prrg2 NA coding upstream 88692 363377 ~ 369013 (+)
rras rras,LOC107658490,LOC107583016,LOC107729461,LOC107730736,LOC107554112,LOC107689668 coding upstream 100774 347722 ~ 356931 (+)
LOC113525007 LOC108280579,LOC108427364,LOC100007086,LOC107554108 coding downstream 4820 486254 ~ 495569 (+)
nosip nosip,LOC107658495,LOC107729514,LOC107583007 coding downstream 15010 496444 ~ 507130 (+)
pax10 LOC108280587,LOC107557340,LOC106521360,LOC107579793 coding downstream 61966 543400 ~ 549365 (+)
LOC113524995 NA coding downstream 73855 555289 ~ 563409 (+)
bcl2l12 NA coding downstream 91960 573394 ~ 586456 (+)
G203108 NA non-coding upstream 150312 259191 ~ 307393 (+)
G203058 NA non-coding upstream 281714 175433 ~ 175991 (+)
G203049 NA non-coding upstream 298772 158552 ~ 158933 (+)
G203043 NA non-coding upstream 310988 144076 ~ 146717 (+)
G202983 NA non-coding upstream 415688 40638 ~ 42017 (+)
G203134 NA non-coding downstream 28485 509919 ~ 512745 (+)
G203135 NA non-coding downstream 32155 513589 ~ 515888 (+)
G203141 NA non-coding downstream 49953 531387 ~ 531618 (+)
G203272 NA non-coding downstream 72287 553721 ~ 553946 (+)
G203277 NA non-coding downstream 105155 586589 ~ 586882 (+)
LOC113525016 NA other upstream 89850 281212 ~ 367855 (+)
prl LOC108280547,LOC108427375,LOC103023606 other upstream 98351 266880 ~ 359354 (+)
G203077 NA other upstream 116429 199260 ~ 341276 (+)
G203081 NA other upstream 254900 201950 ~ 202805 (+)
G203047 NA other upstream 294569 156620 ~ 163136 (+)
LOC117598976 NA other downstream 41679 523113 ~ 529624 (+)
unc119.2 LOC108280499,LOC107689658,LOC107730769,LOC107658437,LOC108427309 other downstream 168010 649444 ~ 652250 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other downstream 185374 666808 ~ 723692 (+)
rnf25 rnf25 other downstream 226304 707738 ~ 717019 (+)
si:dkey-16l2.17 LOC108280473 other downstream 245295 726729 ~ 732890 (+)

Expression


Co-expression Network