slc1a9 (slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473)


Basic Information

Item Value
gene id slc1a9
gene name slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2012233 ~ 2061070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310160.1
ATGCACTTAGATATTTCAGCCCCAGGGCCTATCGCTCAGATAAAGGGAGAGTGCGAGAAGAGCAAGAGAAGAGAATTTTTTCAGAAAGCGACGCTGCTCAGCTTGCCGCAGTCTGACCTAATTCTCCTGGACCTGCCCCAACAGCAGCAAGCCACCGTGGCAGGCAAGGtaggggtcagaggtcaaggGATGCCAGCAGACCTGGAACACAGTGGCTTTCTGATAGAGATCTCACCGAGAATAAAGTGTGCCTCTTCTGTCCGACTCCACCCAAGCTCCGAGCAGAACAAGCGCTATAAAATTACCCGCAGGAATGACAACCACGCACATCGGCGGCACTTAAACACCGGTATCTGCGCTTCAGGTAGGATGACGAATCATCAGTTGGAGAAGGAGATGGGCGGAGCCAGCCTGGTTGATGAGGAAGGAAAGGCGGAGCCTAAAGAAGGTCTTTTCCAACAACACTGCGGCTGGTTTGCACGCAACCTTCTGCTTGCCCTCACCATtctgggtgtaatAGGAGGCTCAGTGCTGGGCCTGCTCTTGCGTTATGTTCCTGATCTGGACTCAGACGCTTTGATGCTGGTCTCCTTCCCTGGAGACATCCTCATGAGGATGCTGAAGATGCTCATCCTCCCCCTCATCATCTCCAGTCTCATcacagGTCTGGCAGGACTGGATGCTCGCTCCAGTGGGAGGATGGGTACCAGGGCCATGGTGTACTACATGTCCACCACCATCATCGCGGCTGTGCTGGGGGTCATCCTGGTGCTCGGGATTCACCCGGGAAACCCCAAACTCAGGAGCATTCAAGCCAGCGCTGGACCCAACAACCACGAGGTCAGCAGCCTGGACGCTTTTCTGGACCTGATCCGAAACCTATTCCCTGAGAACCTGGTCCAGGCCTGCTTTCAACAGGTTCAGACGGTGGTGAAGAAAGTATCCGTGCCCGTCAGCAACCAGAGCGAGCCTGTTTCTGTCAACAGGAAGAAGCTGGAGTTCAAGTGGGGGATGAACGTTCTGGgtttgATCGGCTTCTTCATCACTTTCGGGATCTGCATGGGAAAAATGGGTGAGAGGGGAAAGATCATGTCCGAGTTCTTCAACATCCTCAATGAGATCATCATGAAGATGGTGTCCATGATCATGTGGTACTCTCCACTCGGCATCGCCTCTCTGATCTGTGGAAAGATCGCCGCCATCGGTGACCTGGAGGCCGTGGCCCAGCAGCTCGGCATGTACATGGTGACGGTGATTGTTGGCCTCATTATCCACGGTGGAATCATTCTGCCCATCATATTCTTCTCTGTGACACGGAAAAACCCATTCAACTTTTATTCCGGGATCTTCCAGGCCTGGATCACGGCACTCGGAACAGCCAGCAGCGCTGGCACGTTGCCCGTTACCTTCCGCTGTCTGGAGGAGAACCTGAAGATCGACAAGCGGGTCACCCGGTTTGTGTTGCCCATCGGCGCCACCATAAACATGGATGGCACGGCGCTTTACGAGGCTGTGGCGGCTATTTTCATCGCCCAGATGAACGGCATCGAGCTGGACGGAGGACAGATTGCCACCGTGAGTATGACGGCCACTCTGGCGAGTGTAGGAGCTGCCAGTATTCCCAGCGCTGGTCTGGTCACCATGCTGCTCATCCTCACCGCAGTGGGTCTCCCGACACAGGACATCAGCCTGCTGGTGGCCGTCGACTGGCTGCTTGACAGAATGCGAACCTCCATCAACGTGGTGGGCGATTCCTTCGGAGCAGGCATCGTCGACTTCCTGTCTAGGGCGGAGCTTTCTCAGATCGACGCAGACATTCCGCTATCAGACGAGGAGTTTGTCCCCCCTCCCCCCATCCTTACTGATATAGACCTGATTGACCCTCTCTGCCCCCCAGAACTGCCCCCTCGCTTCCCCCGGCCCCCCAAACTcaaccaccaccagcagcagcaccaccaccaccaccactaccaccctCCTGCGTCTCTGAGccactctcgctctctctctacTCGCTCTGCTCGCTCTCCGTCCCCTCGCTCCGTCCACTCGCCCTCGCCTCTGTCCGTGTGTTCACACTCTCCTCGTCCTCACCGCACACACTCGCCCCGCCTCCTGAACCGCCGCTCCGACCACGGCTACTGCGCTCTGCCCTCGCATGACCACCAGGTGTCCACGCTGCCGCGAGACTACAGGGAGAGACaccgagagcgagagaggggcAGTGAGAAGCTGCGTAGACGAGAGAAAGGCCGAGAGAGCGAGACggaggaagatgaagagagagagaggatgatgGATGAGGCCAGTGAGGGAGAAGAAAGTGACGACACAGCCTACGACCGAAGTCACTCCATCCCGCCCTGTGAGCTCCCCTGAGGGAGTCGCTCTGTCACTCCCACCATCCGCCCCCTTTACCACACTTTTACTACAGTTCCTAACGCTTTACAGCACCTGGTCACAGCATTTATCAAACTGTATACAAActaatttatt

Function

symbol description
slc1a9 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: excitatory amino acid transporter 2 isoform X1

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310160.1 True 2496 mRNA 0.56 13 2012233 2061070

Neighbor

gene id symbol gene type direction distance location
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding upstream 109047 1890285 ~ 1903186 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 142063 1854742 ~ 1870170 (+)
zgc:195001 LOC108274956 coding upstream 172895 1828671 ~ 1839338 (+)
emc10 emc10 coding upstream 186165 1816311 ~ 1826068 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 288435 1678312 ~ 1723798 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 23482 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 31489 2092559 ~ 2114069 (+)
grna NA coding downstream 69458 2130528 ~ 2174611 (+)
LOC117598829 NA coding downstream 94529 2155599 ~ 2155849 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding downstream 126295 2187365 ~ 2195026 (+)
G203935 NA non-coding upstream 3627 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 25018 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 89754 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 140673 1856423 ~ 1871560 (+)
G203867 NA non-coding upstream 145222 1772629 ~ 1867011 (+)
G203955 NA non-coding downstream 93366 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 137043 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 163479 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 197412 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 327914 2388984 ~ 2392499 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 24318 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 122718 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 392259 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 650773 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 775031 1220494 ~ 1237202 (+)
rundc1 rundc1 other downstream 116613 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 806698 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 942538 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1131634 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1473219 3534289 ~ 3661164 (+)

Expression


Co-expression Network