grna


Basic Information

Item Value
gene id grna
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2130528 ~ 2174611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310161.1
CTCAGAACCAGGAGCTCGGGGAAGAGACGGTGATGTTCGACCAGTTCAGAAGCTCTCCGGGTTCCAAAATGACCCATTTGTGGATGTTAAGGCTGGCAGCTGGACTGCTCATGCTGAGCCTGGTGGCCGGGTCGAAGTGTCCTGATCAGCAGCGCTGTGGAGACGAGCAGACGTGTTGCCAGATTCATTCTGGAGAATTCAACTGCTGTCCCTTTCATCAGggtgagTGCTGTGAAGACCACTTACACTGCTGCCCCGAGGGCATGTTGTGTGAAGTGAAAGAATCCAGATGCACAAACGCTACACACTCGTTCCCATGGGTCGAGAGATTTCCTTCCAAACATGCCGGCTTCATCAAATCATTCAGAATGATCAGCTCCTCTGCTGCTAATAATATGTATGACACCGTCTGCCCGGATAATTCATTCTGCCCGTCGGAGTTCTCCTGCCTGAAAGTGTCCAGCACGTACGGCTGCTGTCCTGTAACGCAAGGCATCATGTGCTCAGATGGGAAACACTGTTGTCCGAATGACCAAGAGTGCACCGCTGACAGCACTTCCTGTGTGAAAACGACAGAACCAGTTCTTGCGGTTTTGTGTGCTGATGGCATATCTGAGTGCCCGCTGGAGACTTCATGCTGTGAGACTGCAGATGGAGGATGGGGGTGTTGCCCAATGCCCAGGGCCGTGTGCTGTGATGATAAAGTGCACTGCTGTCCAGAAGACAGCGTTTGTGACGTAAACAACGCCAAGTGTGTGTCTTCCACCAATCACGAACTTCCCATGTGGGCCAAGTTTCCTGCTCGCCAGAGGGCTGCCTGGGAGGACCGCAAATACTCTGACATTCCCTGTGATGAGACTGTGGCCTGTCCTGATGGAAGCACGTGCTGTAAGGATAAACAGGGAGAATGGGACTGTTGCCCTGTGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAAGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGATGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCGTCAGGTTCAGTGCCCTGGGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGGCGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAGCGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGATGTGTGTTGTGAGGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGATGACGACCGTCAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGTGTAACCCTGCTGCTGGGTCATGTGGCGACCGTCAGGTTCAGTGCCCTGGCTGAGAAGAAGGAGCCGAGCCGACCAATCGGGTGGACAGAAGCTTCTAGAAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAAACCACATGCTGTAAGAGCGAACAGGAGGATGGGGCTGCTGCCTATGCCTCCAGATGTTCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGGTGGCAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgACGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAATGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCGGTGGACAGAAGCTTCTAGAAACCAAAGtttctgATGTTCCCTGTGACGACACTGTGGCTTGTCCTGATGGAACCACATGCTGTAAGAACGAACAGGGAGGATGGGGCTGCTGCCCTATGCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAAAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAATCCGAGATAAGAATGTTCCAAAAGACTCTGTTGTTCCCTGTAATGACACTGTGGCCTGTGATGATGGGACCACGTGCTGTAAGAACCAACAGGGAGGATGGAGCTGCTGTCCACTTCCTCAGGCGGTGTGTTGTGAGGACTTTATCCACTGCTGTCCTCATGGGAAAGAGTGTAACCTCGCTGCTGGGTCATGTGACGACCCGTCAGGTTCAGTGCCCTGGCTGAAGAAGGAGCCGAGCCGACCAACTGCAGCAACAACTCAAAATACATCAGTAAACggAGTTTTAGTACAGTGTGACCCTCACGTGTCCTGTCCTGATCACACCACCTGCTGCTTCATGAAGAAGAGCCAGAAATGGGGCTGCTGTCCTCTGGCCCAGGCTACATGCTGTGCGGACGGAGAGAACTGCTGTCCGAAAGGCTACACCTGCCATGACCAGTGTTGCGTGAAAAGCTCCTGGATGAAGGTCGACTCTGTGCCTTTAACCTCCGTCAGGGACACGGCGATGCCGCAGATCCAAACTGACATCGACTGCGGAGGAGGGTTCAGCTGCAAAGACACGGAAACCTGCTGCAGGACGTCAGAGAGCTCCTGGGGCTGCTGCCCAGCTCCGAAGgctgtgtGTTGCAGTGATATGCTGCATTGCTGTCCCGCTGGATACACCTGTGATGAGTCCGGCTCCTGCACTCCAGCGTTGGGCTTCGACTGGGAGGTGTTCTTCTCCAGGAAGAAACGAGCTCGCGCtgtataaccacacacacacacacacacacacacacacacacacacactgaccttgtcCTACTGAGCGACATCACACTTCGAACTAGAATATAGGTCACAAGCATGTTACACTAATcaggttttatattttagtaatacatggtgattttattttgaatagAAAATGAATTGATGCTAATCAGAAGGGCTGAGTATCATCCTGAAGATCATCCTGTTTACATTCATTAATCAATCTCCAATCCTGCGTTCCAGTACTGATTTTACACCTCTATACACTTCCCCTGTCCACCTAGAAGTTAACTATCAGCAAGGGGCCACTTGCAGC

Function

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0048675 axon extension biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310161.1 True 6893 mRNA 0.54 57 2130528 2174611

Neighbor

gene id symbol gene type direction distance location
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding upstream 16459 2092559 ~ 2114069 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding upstream 39075 2084552 ~ 2091453 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding upstream 69458 2012233 ~ 2061070 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding upstream 227342 1890285 ~ 1903186 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 260358 1854742 ~ 1870170 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding downstream 12754 2187365 ~ 2195026 (+)
slc25a39 LOC108276595,LOC108434938 coding downstream 24138 2198749 ~ 2212411 (+)
nbr1b LOC108276620,LOC108437991 coding downstream 64998 2239609 ~ 2258256 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 447559 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 680785 2855396 ~ 2856253 (+)
G203935 NA non-coding upstream 121922 2008401 ~ 2008606 (+)
G203913 NA non-coding upstream 143313 1919023 ~ 1987215 (+)
G203906 NA non-coding upstream 208049 1905839 ~ 1922479 (+)
G203898 NA non-coding upstream 258968 1856423 ~ 1871560 (+)
G203885 NA non-coding upstream 305235 1824978 ~ 1825293 (+)
G203965 NA non-coding downstream 23502 2198113 ~ 2198333 (+)
G203973 NA non-coding downstream 49938 2224549 ~ 2227164 (+)
G203967 NA non-coding downstream 83871 2258482 ~ 2260374 (+)
G203996 NA non-coding downstream 214373 2388984 ~ 2392499 (+)
LOC117598836 NA non-coding downstream 349377 2523988 ~ 2524878 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 142613 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 241013 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 510554 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 769068 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 893326 1220494 ~ 1237202 (+)
rundc1 rundc1 other downstream 3072 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 693157 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 828997 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1018093 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1359678 3534289 ~ 3661164 (+)

Expression


Co-expression Network