LOC113528065 (LOC108276106,LOC108261374,LOC108276032,LOC108276084)


Basic Information

Item Value
gene id LOC113528065
gene name LOC108276106,LOC108261374,LOC108276032,LOC108276084
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2363124 ~ 2375676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310169.1
ATGCATAGAAAAAAGACCATCAACCGCGACGCTTCATCAGTTCATGAGTTTCAACCACATGCTCATGAACTTCATGAGATTCATCGTGAGAAGACAGTAGCAGTGGACACTATAATTAACACCAAGATGAACGACGCCTCAAAGACCAGGATGCTGAGACTTTGTCTTAATTTAATTCTCGTCTGTGTTCTTAGAGCTTCTCTGCTGGCTGATGGCGCTAACATACGACTTGCTGGTGGCAATCACTCCTGCTCTGGTAGAGTGGAAGTGTATTATAATAACCAGTGGGGAACTGTGTGTGATGACGACTGGGACATGAATGATGCGCAGGTGGTGTGTAGACAGCTTGGATGTGGTAATGCTGTCAGTGCACCTCAAAGTGCCCACTTTGGTCAGGGAAGTGGCCCAATACGGCTGGATGATGTTCAGTGTTCTGGAAGTGAGAGCGCCATCACACAGTGCTCTCATAATGGATTTGGAAACCACAACTGTGGCCATGGTGAAGATGCTGGTGTTACTTGCTCAGGCCATAATGCGATCAGGCTGGTGAATGGTGTGAGTAACTGTTGTGGTCGAGTGGAGATCCAGCACAATGGCCgttggggaacagtgtgtgatgattactGGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCATAATGCCCACTTTGGTGAGGGAAGTGAACCAACCTGGCTGGATAATGTTCAGTGTACTGGAACTGAGAGCTCCATAGATCAGTGCTCACACACAGGATTTGGAGTAGAGTACTGTGGACAtggtgaagatgctggagtcatctgctcAAaCCTGCAGACTCCCACATTGACTCGGATCTCTCCAAACTCTGTGATCTCACCTGGAGAAGTCCTTCAGTTCAGATGTACCACACCCAGTCCAACATGCATCTCTGTGGACTTCACTTTGTATAAAAACGGTACTTCAATAAAGAATCAAACTGCAGAGTCTACAACAACATTTAATCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGACTACTCATACAGGGAAAGTAACTCCACATCATCCAGGAGCAACTCCATTACCATCACTGTGGATGGCGCTAACATACGACTTGCTGGTGGCAATCACTCCTGCTCTGGTAGAGTGGAAGTCTATTATAATAaccagtggggaacagtgtgtgatgacagTTGGGACATGAATGATGCTCAGGTGGTGTGTAGACAGCTTGGATGTGGTAATGCTCTCAGCGCACCTCAAAGTGCCCACTTTGGTCAGGGAAGTGGCCCAATATGGCTGGATGATGTTCAGTGTTCTGGAAGTGAAAGCGCCATCACACAGTGCTCTCATAATGGATTTGGAAACCACAACTGTGACCATAGTGAAGATGCTGGTGTTACTTGCTCAGCATCTCTGGCTCCCTACATTGGTGTGGGAGTGACAGCAGGACTGCTTCTCATATTAGTTCCAGTCATCATTTGGTTTGTGAAGACACAAAAAAGACGTCAAAGACAATGTCAGATGGACAGGAAGAAGGATACACAGTGTGCCAGAAACACATGTGACAGTCCCCaaggagagactgagacagatgATGAAGCCGATTATGAAAACAGCAAAACTATTTTCCCGCAGAAGGACGATTCAAACAACTCTGATAACGACTACATTATTGTTGATGCTCAAGAACAAAGAAGTGATGTGGACAATGACAAAGAGGATGTAGAAATTTATGCAAACTGTGTAGAGTAGTGCTGAGAACTAAACAATTATCCAATATCTACAGTCCACAAACAATAACATGgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310169.1 True 1834 mRNA 0.46 8 2363124 2375676

Neighbor

gene id symbol gene type direction distance location
LOC113528064 LOC108276106,LOC108276032 coding downstream 39478 2305276 ~ 2323646 (-)
LOC117598982 LOC108276075,LOC108276032 coding downstream 58675 2289417 ~ 2304449 (-)
LOC113528224 LOC108276032 coding downstream 79821 2269671 ~ 2283303 (-)
aoc2 LOC108276610 coding downstream 129829 2225611 ~ 2233295 (-)
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 503415 1841989 ~ 1859709 (-)
LOC113528063 LOC108261353,LOC108261342,LOC108276032 coding upstream 16487 2392163 ~ 2400882 (-)
rarab rara,LOC108261354,LOC107554136,LOC108434941,LOC107689638,LOC107737746,LOC107695008,LOC107582978 coding upstream 363562 2739238 ~ 2775089 (-)
LOC117598766 NA coding upstream 413500 2789176 ~ 2833854 (-)
abi3a LOC108276098,LOC108434940 coding upstream 664305 3039981 ~ 3054967 (-)
LOC113528219 LOC108276187 coding upstream 681741 3057417 ~ 3058956 (-)
G204269 NA non-coding downstream 97911 2264843 ~ 2265213 (-)
G204264 NA non-coding downstream 102750 2258504 ~ 2260374 (-)
G204191 NA non-coding downstream 148526 2213117 ~ 2214598 (-)
G204187 NA non-coding downstream 150681 2210785 ~ 2212443 (-)
G204234 NA non-coding downstream 157003 2205778 ~ 2206121 (-)
LOC117598835 NA non-coding upstream 38643 2414319 ~ 2415527 (-)
LOC117598837 NA non-coding upstream 120936 2496612 ~ 2502195 (-)
G204317 NA non-coding upstream 165450 2541126 ~ 2541525 (-)
LOC117598767 NA non-coding upstream 224033 2599709 ~ 2600352 (-)
G204518 NA non-coding upstream 590207 2965883 ~ 2970869 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 18212 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 167584 2112445 ~ 2195540 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other downstream 285647 2065888 ~ 2077477 (-)
LOC113527889 LOC108278777 other downstream 349873 1991173 ~ 2013251 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 1017953 1265662 ~ 1345171 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 57473 2433149 ~ 2538111 (-)
si:dkey-283b1.6 NA other upstream 658570 3034246 ~ 3039652 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other upstream 698301 3073977 ~ 3078018 (-)
nde1 nde1 other upstream 1007155 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 1393179 3768855 ~ 3865849 (-)

Expression


Co-expression Network