LOC117598987 (LOC108276032)


Basic Information

Item Value
gene id LOC117598987
gene name LOC108276032
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2908172 ~ 2917545 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310178.1
CTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAaCTTGCAGGCTCCCACATTGACTTGGATCTCCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGCTCACATGTACCACACCCGCCCAACGTGCATCTCTGTAGACTTCAGTTTGTATAAAACTGGGACATCAATAATGACACAAACTGCAGATTCTACAACAACATTTACTCTGACTGTAGATGCCTCACATCAGGGCCAGTACACCTGTGTCTATTCATACAGGGAAAGTACCTCCATATCATCCAGGAGCAACTCCATTAACATCACTGTAGTAAACTTACAGCAGCCCAACATCTCCTTCACTGCCACTGGTGGATGGTTCCACTGGGGGCCTAACGGACCAGAAGTGACTATTGGCTACGGATTCTCCGTCATTTGCTCCATTAAAGCTCAGTATCCAGGAGGTTCCTTTCACTTGGCGATCAGCGGATCCAACATCACCAGGACTCAGTCAGCTGTTAATCACTCAGCTGTCTTCCTTTTTCCTAAGGCAGATTGTGTCCATCAGGGAAACTACAACTGTACTTATGAAGTTAACGTGTCTTCACGTACCTTTACTTCCACCAAACTGCTGGCCATCACTGTGAAagGCTGTAATGAGATCAGAGTGGTGAATGGGCCGAGGAGCTGTTGCGGTCGAGTGGAGATCCAGCACAGAGcccagtggggaacagtgtgtgatgatgattgGGACTTAAAGGATGCAGAGGTGGTGTGTAGACAGCTTGGATGTGGTAAAGCCGTCAGCGCTCCTCAAAGTGCCCACTTTGGCGAGGGAAGTGAACCAACCTGGCTGGATAATGTGCAGTGTAATGGAACTGAGAGCTACATAGATCAGTGCTCACACAATGGATTTGGAATAGAGAACTGTGGACAtggtgaagatgctggagtTGTGTGCTCAAACTTGCAGGCTCCCCACATGACTTGGATCTCCCAAACTCTGTGGTCTCACCTGGAGAAGTCCTTCAGCCACATGTACCACACCCGCCCAATGCATCTCTCATGGAAATTCCACTTCCTGACCATTACCGCTGCAGTTATGACTTTGTGGTCTCGAAACAGCAGTGAGCTTTCAGTGCTGCATGGAGAAACTCTccagGTGTTGGACTTCGTCCTAAGCGGTGGTGGAAGTGTAGGAACAGTTATGACCAGATTGGCTTTGTTCCATCTAATATCCTGGAGCCGTCCAACCAGACAGAGCAAGACTACAGCGTGTGGTAATCGCTTAAGCCGTCACGTAATGCTCATGAATAATGAGCTTGCACAGCTGCTGGCTAATGGGAGATCGGGATCAATGCGGCCTCTGGTTATCAACAAGACCAACGACACTACAGTACCTCTCAACTACCACTCACCTTCGGCTGAGGTATCGGAGTGGCTCAGAGGCAAAGGATTCAGTGATAAcacagCCAACAGTTTGGGGGTTCTCACTGAGctcagctctttctctctgagtAAAGAGGAGCTGTGCAAGACTGAAAGAAAAGCCACTGAGCTGGAGGCAGTGATGAGAAAACAGAAGATGAAAGTGGATCCCAGCATAGAGGGGGGAGAATTTtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310178.1 True 1710 mRNA 0.49 10 2908172 2917545

Neighbor

gene id symbol gene type direction distance location
hspb9 NA coding upstream 51919 2855396 ~ 2856253 (+)
LOC117598986 LOC108276106,LOC108276032 coding upstream 216458 2622170 ~ 2691714 (+)
nbr1b LOC108276620,LOC108437991 coding upstream 649916 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 695761 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 713146 2187365 ~ 2195026 (+)
LOC113528204 LOC108258307 coding downstream 1329 2918874 ~ 2936656 (+)
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding downstream 97438 3014983 ~ 3031164 (+)
LOC113528048 cacng2a,cacng2,LOC108275959,LOC107732897,LOC107680886,LOC107561356,LOC107687643,LOC107729558,LOC108434911 coding downstream 170817 3088362 ~ 3146182 (+)
kat7a LOC108275911,LOC108437993,LOC107689642,LOC107554133,LOC107737751 coding downstream 242388 3159933 ~ 3174285 (+)
zgc:113090 NA coding downstream 260004 3177549 ~ 3182903 (+)
G204362 NA non-coding upstream 136862 2770686 ~ 2771310 (+)
G204323 NA non-coding upstream 170886 2544989 ~ 2737286 (+)
G204333 NA non-coding upstream 184363 2656576 ~ 2723809 (+)
G204330 NA non-coding upstream 281023 2619027 ~ 2627149 (+)
G204316 NA non-coding upstream 366714 2541114 ~ 2541458 (+)
G204410 NA non-coding downstream 116726 3034271 ~ 3036163 (+)
G204417 NA non-coding downstream 147360 3064905 ~ 3072726 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 298242 3215787 ~ 3218884 (+)
G204678 NA non-coding downstream 435753 3353298 ~ 3356906 (+)
G204679 NA non-coding downstream 482224 3399769 ~ 3403347 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 129 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 722008 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 920257 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 1018657 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 1288198 1561524 ~ 1619974 (+)
pyya LOC108276154,LOC108434917 other downstream 86063 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 275159 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 616744 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1049188 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 1053634 3971179 ~ 3971250 (+)

Expression


Co-expression Network