LOC113528204 (LOC108258307)


Basic Information

Item Value
gene id LOC113528204
gene name LOC108258307
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2918874 ~ 2936656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310179.1
ggaactTGTGAAGTCATAGATGGGGAAAGTCACGTGACGCTCTGCTCTCACCTGTGGCTGTTATTAATGCTTCACCTCTGGGGTTCTTTAAATCGAGCTCCTAACACGGATCTGACTcgaatttctgtcattttttttaaaaacctccaGAGCAACGTGACAATATCCGACGTGCAAGTTAGTGCCTGAAAGCGTGCGTTTTTAACATGCACAAACAGGCGCTAACTGTCCATTCATCATGACCAGGATTTCTCTTCATCTTCTCaatgtaattaaatgaatgtagttaaaaacaaatgagCTGAAGGTGCTGAGGATGTTCCCCCCGAGAGAAAACCGCTGTCACCGCTTCCAGGCCAACATCTTTAACAAGAGGAAATGCCAGAACTGCTTCAGACCTGCTGAATCCCACACACTCAGGGAATCTGATTTACACGCAACGAAACCTGTGAAAGCTGGGTGGCTTCTTTTAGCACCAGAGGGTATAGACTTTCTGAATCCTGCTCATAAGAACCGGAAATGGCAGCGACGGTATTTCATACTGTATGAGCATGGGCTTCTGCGCTACGCTCTGGATGAGATGcctgGTACTCTGCCCCAGGGCAGTGTGAACATGAGTGAGTGCAGTGACGTGCTGGACGCCTCATCCCAGACCAGCTTCTGCAGCAGTCTACGCCTATGCTTCAGTGACCgagattattatataagaaCAGAGAATGAAGAGAACATCACTGGGTGGCAAGAAAACCTGCTCATTCAcacaaatgctgcaaaaacaaaccaaaagaagCGAGAAGGAGAGAGCAAGCAGTCCCACTGGATTATGGAGAAGCCTATGACTATATTGAGGGAACTTGGGCATAACCTAAAGAAGCACACACTACCTGAAAGAAACCAGGTGTCTGATGGAAGTAATAGCAGCTATATCCTGAACACCAGCTGCAGCAGTGGTAGCAGAAGCACCAAGAAAAGAAGCCCTGAAAACAGTAGAACCGCTAACAgcataattattaaacaaagtGTTAATATTGGAGATCTAAACACCAGGATTGGTGCTGAAGGCATTAGTGTTGGTCGATGTGGTAGTAAAGACACAAGCAGCAGTGATATGGAGGGTGTGGAGGTCGGTTGTCCACTCTCTTCTTCTCCAGGGGCGGGGCATCACAAGGAACCCAAGGAGCTCAATGGGAAAGGAGGAGTCCACTCCAGCAGCAGAATGAGCCGTGCCAACTCTCCGAATACCTCCTCCAATAGTTCCTACCTCTTCTCAACGCTTAGTCAACTGCCCACTCACTTCAGCACAAACGCAGCTAAGAGCAGTGAAGGCGTAGAGAGTGGCTATTCTTCTCTGGAGAAAACAAGATCTGATGCTGAGGACACACAGACAGGCCCTGACAAGGACTACAGgcgATCACAAGTGATTAGTCAGTTTGAGCAGGAAAATGGGATGTATATGCCTGCCAGAGAGCAGTGTTCCTCTTCATCAATATCCACCTGTTCTGCTGCAGAATATGATCAAGACGACAGAGCAAATCACAGTACAACACGGGCGTTTGCTCGTGGTCATGGTGCATCTGGTGTCTCTGCTTCCACCTGCCGACGCTCCAAATCATTGGAGCGCAATCTGGCTGAACACACTCCCACGCCTGACTTGTTAAATTTTAAGAAGGGATGGATGTCAAGATTGGGAGAAGATGGAAAGTGGAGGAAGCATTGGTTTGTTCTCACTAACCAGAGTTTACGATTCTACAGAGATTCGGTTGCTGAAGAGGCTGCAGATCTGGATGGTGAGATCAACCTGTCCACCTGTTATGACATCACAGACTTTCCTGTGCAGAGGAACTATGGCTTTCAAATTCATACTAAAGATGGAGTTTTTACACTCTGTGCAACAACATCTGGGATTCGCCAGAACTGGATTCAGGCAGTTATGAAGAATGTTCAGACATCTGTTGCCCCTGATGTCACATGCTCTCTTCCTCAAAACGTGCCAGTGGGCATGGTTTCTGAATGTAGATTTCCTTTTGCTTCAAACTCCTCATGTttagaggaggagaagaggagcaGTGTCAGTGAACGACGCAGGGAGGGGCATTACAAAACCTTTGACTGGGCTGAGTTTAGTCACATGCGGAAGAAAAGGGAGACACTCAGCAGGCATTCAGGAATAGAATCAGAGTTTGTCTGTGGTGACTCCGTGCCCCCTGCACCTGCATCATCTCCTGAAGACCCTGTCACAAGCTCCATTACAGTGGTGCATACTGAGGCGGGTGAGGCTCCACGTGTTACAAAGACCACAGACTCGTCACCGCTCATGGTGAGATCCAGTATTGTCGCCAGTAAACCAAGTGATCAGAAGAGTACAGAAGTTGGtggtgtggatttttttaatgacatttctaATGCACAGatggaagagaagaaagagGCTGATCTTTACACCTCGCCCTCACCAGCCACATTTTCCTCATTGTCAGTGCAAACAGAGTGGCAGTGGGAGCTGGAGCTTAAAACGCTCCACAGGGAACTGAAGGCCATGTatgagagaagtgagagagagaggagggagtaTAAACTCTCTGAGGCCCGCCTCCAGACTGAGTTGATTGGCAGTCTGGACTGCCTACATGAAACAGAGTCAAAACTGCAGAAAACTGAAGCCACCCTGAGGGAACGAGAGAGTGAGCTGGAGGAATTGCGAAGTTGTTTGGAAGAAGTTTCAGAACGTATGAAGGCTGCAGAGGAGGTGCAGGCTCTGAAAGATGTTCGCCTACAGAGACACTTGCGCCTTCTGGAGGAGAATCAGGAAAGGGAGAGGAGGAGTCTCAGTGATAGTCTTGAGCATGCAGAGAAGCATGGGAAGGAACTGGAGGAGAGGCTTATGCAAACAGAAGCGATGCTGCAAAAGATGCCAACAGGGGGCATAGTGGAGCAGTTGGAGAGAAAGTGCCAAGAGCTGCAGAACCAGCTAGATGAATCGGACAGCGAGTTGAGTAGGTTGCAGGCACGGCTTCAGAATGAGGAGACGCTGTACTATGATATGGAGCATAACTATGAGCAAGTATGTGAGGAGTTGGAGTTGGTGCGCGGCACATTGCAAAACTGCGAGAGGGTATGTGAAGAGCGCTTTAGAATCCAGTTGGAGCAGCAACAAGAAAAGCTTAATAGGAAGGGGGGTGCGACTCTGGAAATGTCTGAACACATGTGGCTGAAAGATGCCTGCCACCATCTTCAGGAGAGCCCAAGCACTGGGGAGAAGGTCAGGAATTTTGGGTTTGGTGATTTGGGGAAACAACCAGTTGCACAGGGAGATGAATCAGAACAAGTAATCTCTGTGATACAAGCATTGGAAAGCAAATTGTGTGACACAGAGGAGAGGCTTCAGGAGATCAATGTGCATCTccagcaacaacagcaaaaacttGGTGATAAGGTAAATGCTCTTAAAGTTGATGAGCAATGGAGTGTGCAGATACCCAATGAGTCATTGGGACTAGGCAATAGAGATGACAAACCAGATGGAAAATGTTGTGGGATCATACGAGAAAAGACTGCGATTAATACTAAAGTTAACTTGGTTACTAATAAGATGCTTAACTTTGATCTCCAGGAAGCCTTGCATGAAGAAGTTACAAGTCCAATGAAGGGTTTATCTCGTGGGATGACTAGCAGGATGCTGTCCCTAGAAGCATTGGTCATCCAGAAGATGGCTTCTGCACTAGAGCATCCCAGCAAACAGCTCCTAGAGGGGATTTCAGAGTTGCAATCCCAGGCCAAGGCCCTTAGAGAGGCTTATGATGGGAGCTCTGAGGGGCCAGTCACAAGGAATTACTCACAGTTGTTTTCATACTATCAGGAGTTGGGTGAGGCAGGGTGCTCACTGGATGAGTGGGAGATCTATAGCATGTGTATGAAAGCAGAACTAGCATACCTCACATACACAAACCACATACACAACCCAGAGAAAGAGAATGGGTCACAGACATTTAATGTCCCATTCTGTCTTTGGTCTGAGGTTACACCACTTGATACCAAAGAAGAAACTAATTCCAAAAAAGGACTCCGGCTATGTGATGTCAGCCTGCCTGAACTGGTACCATGTAGGGAACAGATGCAAGGTGAGAAGGTGGGGTACTGCCCAGGAGACATGGACAAAGAGAGTCTAGTGGAAGAGCTGCAGGCACAGGCTCGTTCCCTGCAGACCCTctctgagcagctgcatccttTGGATCAAGGTTTGGATGCAGGTGTACTGTCTGAGCTTTCTCCAGTCCTCCTGCGGACTGTGTTGTTCCAGGCCATTCTGGCATACATGTCAAGCCGACTACATGTGGCTCTGCAGCGGCAAGTGCGTCTCTTGCAAGATCAGTGGGAGCAGGCTATGTGCCAGTGCCACAGACTGGAGGGCCTGTTGCAAGAACAGGCTGAGCGCTATGAGGAAAAGCTGCGTGAGGATCGCGTGGTCATAGAGGTGGCCGAGCTGGCACGCGTCTCAGCTGAGACAGCTGCGCAGATAAAGGGACAAGAAGTTCAGCGACTGGAAGCAGAGTTTGAGAAAAAGCTCCAGGAGCTTCAGCAAATCCATGAGGAAGAGATGACTCGTTTCCATGAGTGTTGTATCCAGAGCCAGTCACAGACTGTGACCCCCACAGAATCCAGTAATGGAGATAGCAAACTTTCTATGAAGGAAAGAATCAGTGAGCTGGAGCTGCAGATTAGATGCTTGGAAGAGGAGACGCAGAGAGGAGATGCAAACGCCTTGAGACAGGCCTATGAACAGGAGCTGGAGACACTGAAGGTTACCTGTGAACTTGGCTTCGGCAGCATGGAGCAGAGTCATCAGAGGGTGATTGAGGAGATGCAGCGGCAACATCAGATAGAGGTGGAACAGCTgctggaagagaaagagagagtactCCAAGAAGAAACCAATGCCACAATTGCAGccATTGAAGCCATGCGCAAAGCTCATAAGGAGGAGCTGGAGAAAAGTCAAACTCAGCAGAATGGAGCCAGCACAGACATCAACAAGCTGCGTGCCCAGTTTAAAGATGAGCTGGATTCACGACACAGGGAACTGGAGGTATTATCTGAGCAGTACTCTCAGAAATGCCTGGAGAATGCACACCTGAGTCGAGccatagagacagaaagacaagcCCTGATCTCTGTAGAGAGAGACAACCAGGAACTCCACACACGCAATCAAGAGCTGAATAAGCACTTGGTGGCTGAACTCTCCCTAATGCAGTCTTGTGTGAATGGAGGAGTGGACCAGTCAGAGCTGTCTCAGGGCAAAGATGTGATTCAGCTGGAGgtggcGTTAAGAGTGAAGGAGTCAGAAATTCAATGTCTGAAGCAAGAGATCAGCTCACTAAAGGAGGAGCTACAAGCTGCAAACAGACGTTGTAAGAAGCTGCTGAATGAGTTGAGTGTTTCAGGTGTCAAATGTCAAAGTGCCTGTGTTAAGCACAGTGCCGAGACTTACAGACAACGGACCCAAAGTTATGatgtGATAAAGTCAAAAAGTAATCCTGACTTCCTGAAGAACCGTATTAAACCAAACCAACCAACCAGATCCAAGaGTCTGAAGGAACGTCTCTCTGTCCAGGAGAGAATGAAGCTTTTTGAATCGGGCAGCAAATAGAAAGATCTGATTGTGTCCCTGTATGTGTGCACTTTTCACAATTTCTGTG

Function

GO: NA

KEGG:

id description
K23792 MPRIP; myosin phosphatase Rho-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310179.1 True 5696 mRNA 0.48 27 2918874 2936656

Neighbor

gene id symbol gene type direction distance location
LOC117598987 LOC108276032 coding upstream 1329 2908172 ~ 2917545 (+)
hspb9 NA coding upstream 62621 2855396 ~ 2856253 (+)
LOC117598986 LOC108276106,LOC108276032 coding upstream 227160 2622170 ~ 2691714 (+)
nbr1b LOC108276620,LOC108437991 coding upstream 660618 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 706463 2198749 ~ 2212411 (+)
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding downstream 78327 3014983 ~ 3031164 (+)
LOC113528048 cacng2a,cacng2,LOC108275959,LOC107732897,LOC107680886,LOC107561356,LOC107687643,LOC107729558,LOC108434911 coding downstream 151706 3088362 ~ 3146182 (+)
kat7a LOC108275911,LOC108437993,LOC107689642,LOC107554133,LOC107737751 coding downstream 223277 3159933 ~ 3174285 (+)
zgc:113090 NA coding downstream 240893 3177549 ~ 3182903 (+)
zgc:153733 LOC108275998 coding downstream 284617 3221273 ~ 3231214 (+)
G204362 NA non-coding upstream 147564 2770686 ~ 2771310 (+)
G204323 NA non-coding upstream 181588 2544989 ~ 2737286 (+)
G204333 NA non-coding upstream 195065 2656576 ~ 2723809 (+)
G204330 NA non-coding upstream 291725 2619027 ~ 2627149 (+)
G204316 NA non-coding upstream 377416 2541114 ~ 2541458 (+)
G204410 NA non-coding downstream 97615 3034271 ~ 3036163 (+)
G204417 NA non-coding downstream 128249 3064905 ~ 3072726 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 279131 3215787 ~ 3218884 (+)
G204678 NA non-coding downstream 416642 3353298 ~ 3356906 (+)
G204679 NA non-coding downstream 463113 3399769 ~ 3403347 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 10831 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 732710 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 930959 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 1029359 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 1298900 1561524 ~ 1619974 (+)
pyya LOC108276154,LOC108434917 other downstream 66952 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 256048 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 597633 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1030077 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 1034523 3971179 ~ 3971250 (+)

Expression


Co-expression Network