mettl2a (LOC108279476)


Basic Information

Item Value
gene id mettl2a
gene name LOC108279476
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8031681 ~ 8042803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310185.1
ATGGCGGCGCCCTCTGCTCTTTACTCACGCGCACTCACGCTCTGGCTGGATGCGCGCGGAGGGGGCGGAGTCTCGGTGACTTCACTAGAACTCCCAGGCAATCCTAGCGCAGGAGGCGGGGTGAGTCGGAGTACGGGTGGGGGAAACATTGCCGGCGTGCTAGCAGATGAGAACATGACCGACTCTGCGAATGGACCGACAGCAGAACCGGCGCACGCGCTCAGGCGGCCTCAGTTCGGTACCCGCTTTCTCACAGACCCGCGGGAAGTGTTTCAGCACAACGCCTGGGATAATGTGCAGTGGTCCGAAGAGCAGGAAAATGCAGCCCGGAGAAAAGTGCAGGAGAACAGCGAGCCTCTTGCAGCAGAgaaacaagATGATTTTGAGAATAGAGCTAATGAGTACTGGAACGACTTCTATGCCATCCATGAGAACCGCTTCTTTAAGGACCGCCACTGGCTCTTCACTGAGTTCCCTGAGCTCGGCCCTCAGCATTCCCAGAGTCCAGGAGAAGGAACAACGTCAGATGAGGAGCTCATCCACATTACAGAAAAGCTGGAGCTGAATGGTGAAGAGACGCATGCGCCTGTCATAGAAGAAGCAGCAGTGTTTCCTGGAGCCTCAGCCTCTTACCGCATTCTGGAGGTAGGCTGTGGAGTTGGCAATACAGTCTTCCCAATTCTGAAGACAAACAATGATCCAGGCCTTTTTGTGTACTGCTGCGATTTCTCCAGCACAGCTATTGACCTCGTCAAGTCTAATCCGGAGTACAACCCATCTCGATGTCACGCCTTCGTCCATGACCTGAGTGATGTCACAGCTGCTTATCCAATGCCAGAGCAGAGCCTCGATGTCATTGTTCTCATATTCGTCCTCTCCGCTCTCCACCCTGAAAAgaTGCAAAGCTCGATCAGCAAGCTGGCCAGTTTGCTCAAACCTGGAGGAGTTCTGTTACTGCGGGACTATGGACGCTACGACATGGCCCAGCTTCGTTTTAAAAAGGGAAGATGTTTATCCGAAAATTTCTATGTCAGAGGAGACGGAACGCGAGTCTATTTTTTCACTCAAGAAGAGCTACACGATCTATTCTGTGGAGCCGGTCTGGAGAAGGTGCAGAATTTAGTGGACAGGAGGCTGCAGGTGAACAGAGGGAAACAGCTGACCATGTACAGAGTCTGGGTGCAGTGTAAATACCGCAAAAACACGAAGCCTCTGCAACCTGCGGCACGGGACTGAGACAAGAAAGCAAGGAAATCCACTGAACTGGATCAGACACTGAACCTCTGATGATTTGGAAATTAGAACCATAAAAACTGAATATGTGGTTGGAAGGCGACGGGTCCTCTCAGTGGCAGTAGAAGAAAGTGGATGGGGAACTTTAAATCCTATCATTCCTTACTGCCCACGTGAACATGCTTTTAACatgcttttaaatgcttttaaacatttatattgtaaaaataaaatggggCATGGTTTTCATAAATAcca

Function

NR:

description
methyltransferase-like protein 2-A

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0016427 tRNA (cytosine) methyltransferase activity molecular_function

KEGG:

id description
K24974 METTL2; tRNA N(3)-methylcytidine methyltransferase METTL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310185.1 True 1491 mRNA 0.51 10 8031681 8042803

Neighbor

gene id symbol gene type direction distance location
itgb3a LOC108279461,LOC108413591 coding upstream 3790 8010533 ~ 8027891 (+)
tcap LOC108261065,LOC108413611,LOC107684635 coding upstream 76436 7953794 ~ 7955245 (+)
syngr1a syngr1a,LOC108261039,LOC108413620 coding upstream 81433 7933366 ~ 7950248 (+)
fam171a2a fam171a2,LOC108258145 coding upstream 100170 7884149 ~ 7931511 (+)
itga2b itga2b coding upstream 151617 7860224 ~ 7880064 (+)
tlk2 tlk2,LOC108413572,LOC107689079,LOC107567040,LOC107660745,LOC107552467 coding downstream 4623 8047426 ~ 8062595 (+)
mrc2 mrc2 coding downstream 27911 8070714 ~ 8114585 (+)
vat1 vat1,LOC108413532,LOC107567018 coding downstream 121040 8163843 ~ 8200783 (+)
asb16 asb16 coding downstream 169226 8212029 ~ 8218351 (+)
tmub2 tmub2,LOC107708558,LOC107660620,LOC107566939,LOC107571926 coding downstream 176722 8219525 ~ 8226005 (+)
G207483 NA non-coding upstream 175792 7855431 ~ 7855889 (+)
LOC113528563 NA non-coding upstream 340012 7686051 ~ 7691669 (+)
G207309 NA non-coding upstream 463868 7564303 ~ 7567813 (+)
G207158 NA non-coding upstream 502943 7444823 ~ 7528738 (+)
G207157 NA non-coding upstream 587928 7443069 ~ 7443753 (+)
LOC117599010 NA non-coding downstream 77649 8120452 ~ 8143237 (+)
G207610 NA non-coding downstream 115141 8157944 ~ 8158181 (+)
G207616 NA non-coding downstream 158489 8201292 ~ 8201592 (+)
LOC113528504 NA non-coding downstream 166495 8209298 ~ 8209867 (+)
G207612 NA non-coding downstream 193930 8236733 ~ 8250981 (+)
trnas-cga_1 NA other upstream 23270 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 178172 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 709716 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 899714 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 929466 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 907663 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1018760 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1901503 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 2306599 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 3237277 11280080 ~ 11388020 (+)

Expression


Co-expression Network