LOC117595684


Basic Information

Item Value
gene id LOC117595684
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16671145 ~ 16688599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310191.1
ATGTCCAATTCTGTCTTCCAGTATGGATCTGTGTTCAAAGTATATTTTGTTACCAAGAAAATCATTGTCTTAGCAGGGtacaaaacagtgaaacaaGCACTTGTTAACTATGCTGAGGAATTTGGGGAAAGAGAAATCAATCACACATTCAAGTTTGCTGAGGAACATGGAATCTTGTTTTCTAATGGGGAGAACTGGAAAGAGATGAGACGTTTTGCTTTAACAAACCTTCGAGACTTTGGAATGGGCAAGAGAGGCAGTGAAGAGAAAATCACTGAGGAAATCCAATACCTTAAAGAAGTGTTTGAGAGCTTTGGAGGAAAACCATTTGACACAACTGAACCAATGAACTATGCTGTCTCCAACATCATCTCATCCATTGTGTATGGAAACAGATTTGAGTACAGTGATCCTCAATTCAAAGAAATGGTCAAAAGGGCAAATGAGAATGTCAGGATTGGTGGGTCAGCTTCTATGCGAATCTTCAACATACTTCCCTGGATAGGTCCATTCTTGAAAAGCAGAAGAACACTCCATgcgaatggtgagaaaaacaagaagcagCAATCAGGACAGAAAAACTCTCGTTTCAATGAGAAGAATCTTATCGCCACAGTGATGAATCTTTTTGTTGCTGGCACTGACACCACTAGCACAACACTGCGCTGGGGGATGCTGCTTATGGCTAAGTACCCTCACATACAGGTTCGGGTCCATGAGGAGATTGACAGGGTGATTGGAGGTCGTCAGCCAGTGGTGGAGGACAGGAAGAACTTGCCTTACACAGATGCAGTGATCCATGAAATCCAGAGACTGGCCAATATAATTCCCATGAGTCTACCCCACACCACCAGCTGGCGCAGGGTGTGCCTGGGAGAAAGCCTGGCCAGGATGGagctcttcctcttcttcagctCCCTCCTGCAGCACTTCCGCTTCACTCCTCCACCAGGGGTGTCAGAGGATCAGCTGGACCTCACAGGTGTGGTTGGGATTACAGTGAACCCCTCTCCCCACAAGCTTTGTGCAGTGAAACGGACCTAATCAAAGGAAGATAAGCAAGGCAATAATACTTCAGAGGATAGGAAAAAGcctatttttcattttactttatCTTGATGGATGTAAAAAaaaaattttcatacaATTTAAAATCCTGAAACCTGTATAATATTACCACAATTCACTTTTCTTTAAGTTATGTCTTACCATTAACAACATAAAGTTCACTGACAACTTCTCTAGGTTAATTCCACAACTGAGTGCATCTACACAGTGCATACTTTCAAATCtgccatttgtttgtttgcacagGTTTTTGAGCTGGAAATTCAAACAAGATTATTCTGGTTTGATTAGGTTTTAAACTGTTAGCACAGACAGTATATGTACTGTAAGAACAACTCTGAtgtcaacaattatttattttaacaaaattattattgatGCTAAAACTTATTTTAAGCAACACATTAAGCGGGATAAAATGTTAGTGTGAGGGATAGGGTTAGTAAGACCAAAGGGAATTGTAGAGCTAGCCTCTTTCAAGGCATCTGTTTACTTAAGCACACATTCACATTGACAAACAAAAAGTACATGCATTAGTGTAGCATGAGAACAACCCACAACTTCTAATCTTTGGAAAAGAAACtttgtttaaaatcattaaatcaaGGCTAGATTAAAACTACATCATTGACTTACtattataaatctaaaaaataatatagaCCTTGCAAGAGAGTTGGTTTATCTGGAAAAGTCTTCTTTgcagttagttttttttttacttgattaCATTTGATCTAATGTGAATTGTTACATAGCTTCTCCGCAGATATGTGCAGAACTGCACTGTAGTTGATTGATCTGTGTATACTATTTGTTAAcatattttgcaaaaataaaaatgaatatgtacTGCAATTCTTTTGTATATACTGTGGCTGCCATTTCAAAGTAATGAATCAGTGAGctcttaatttttttgtacaattttgTGTTCAAGTCAGTATTTCTAAAGACTAAAGTGTATATGTAttcactgtattttattatggCACTAAACACCTTATATAATGAACACCA

Function

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310191.1 True 2088 mRNA 0.38 8 16671145 16688599

Neighbor

gene id symbol gene type direction distance location
LOC113528041 LOC108276772 coding downstream 36408 16615091 ~ 16634737 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding downstream 125505 16538381 ~ 16545640 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding downstream 133891 16501121 ~ 16537254 (-)
sox8a sox8 coding downstream 340606 16326885 ~ 16330539 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding downstream 443703 16225651 ~ 16227442 (-)
abca3b abca3,abca3b,LOC107742093 coding upstream 2911 16691510 ~ 16736757 (-)
ccnf ccnf,LOC103461596,LOC107683020 coding upstream 49342 16737941 ~ 16752068 (-)
LOC113527928 LOC108259859 coding upstream 81699 16770298 ~ 16779653 (-)
dnaja3a dnaja3,LOC108431932 coding upstream 131641 16820240 ~ 16829084 (-)
vasnb LOC108276517 coding upstream 221314 16909913 ~ 16931628 (-)
G212319 NA non-coding downstream 173913 16478891 ~ 16497232 (-)
LOC113528275 NA non-coding downstream 215298 16453560 ~ 16455847 (-)
G212018 NA non-coding downstream 630746 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 633828 16037116 ~ 16037317 (-)
G212006 NA non-coding downstream 728636 15940586 ~ 15942509 (-)
G212463 NA non-coding upstream 143369 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 489929 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 595901 17284500 ~ 17284707 (-)
G212643 NA non-coding upstream 603761 17292360 ~ 17292723 (-)
G212654 NA non-coding upstream 651988 17340587 ~ 17342051 (-)
LOC113528039 LOC108276772 other downstream 72457 16572545 ~ 16598688 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 467154 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1685033 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1981013 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 2150170 14520277 ~ 14520975 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 72633 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 604174 17292773 ~ 17319719 (-)
G212700 NA other upstream 697612 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 701587 17390186 ~ 17518527 (-)
G212750 LOC100136012,LOC107575789 other upstream 986228 17674827 ~ 17675284 (-)

Expression


Co-expression Network