LOC113528633


Basic Information

Item Value
gene id LOC113528633
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16995855 ~ 16997652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310192.1
TCTCGCATTACCACCCCACGGTTTTCCCTACAAGTTTTGTGACTAGGGCTGCAATGATTAGTCGTCAACGTCGACGACATCAACTATAAAATTTCGTCGACGTGAAATTTCATTGTCGACACGTCGTATTATTTAAGCAGCCTCATTTAACTCATGACTTAATACTTCTTCGTTTACTGTCTATGATAAGAACACATGCAAATGAAACTGCAATGCACCGCAAGAAGTGGTGGGGGCAGTAGCATCTTTTAACCATTTGCGTcctaaatcaatcaatcaatcagtgaaGAAGTATAACACAGAGATCAACAATGGCAGAAGCTCCGGCTCCGTGTGAGCAGAATGTAATGAACTTGAGGCCGCGACTGTCTAAAGTCTGGGAgttttttaaagataataaaaataataaagtcaaGTGCACTGTCTGCAATGAGTTGGCCTACCACGGCAGTACAACGGCGATGCACGAGCATCTTAAGCGAAAACACCCAGGACTGGTGTCCAAAGTTCCAGATGGAAGTTCAAAGCAAAGGCGTGTGAATGACTTCGTCCTGCGGAGAGGCATTTGCACCCCCGAAATGGCCAGAATTCTCACTAACAGCGTTCTAAACATGCTGGTCTACGACATGAGGCCTATATCAATGGTGGAAGGCGAGGGTTTCAAGGAAATGATTCATACATTCAATCCTGACTATGTGTTGCCTTCAAGAACACATTTTACCAAGCTCATGGAGGGAAAGTATGAAACAATTCTCAATCATGTTAAAGATACTCTCAAATCAGCAAATGGGAAGATCGCCCTGACAGCCGATGCATGGGCCACCGAAGCATACCTGGGCATTACTTGCCACTATTTAAGTGATGACTGGGTATTCAAAAAGTACTGCCTGACAACAATGCCACTTGAGGAACGACACACAGGTGCAAACATCGCAGGGTGGATTGAGGAGCCTTTAGAAAAGGTTGGACTCCCTCCCTCCAAGATTGTAGGGATTGTCCATGACAATGCCCGCAATATTGTGCTAGCTGCTAACATTTTGCACGATCGACACGGGTGGCTGTCGGTTCGTTGTGCAGGCCACACCTTACAGCTGGTGGTCAACCATGCTCTGAAGCAAACACAGATCAGTAATGCACTTGGAGCAGCGAGGGCTCTTGTGGAGCACTTCAAAAAAAGTGAATTGGCTTCAACCAAGCTTAAGCTTAAGCAAAAACAGATGGGGACTCCAGACCACCGTCTCATCCAGGACGTCTCCACTAGATGGAATAGCACATATTACATGATCAACAGCAAGGTAAAAGGTACCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310192.1 True 1310 mRNA 0.45 2 16995855 16997652

Neighbor

gene id symbol gene type direction distance location
LOC113528175 pam16,LOC108276516,LOC108431934,LOC107601580,LOC107553663,LOC107715621,LOC107718618,LOC106601835,LOC107695711,LOC105924796 coding upstream 24088 16832403 ~ 16971767 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding upstream 176587 16808875 ~ 16819268 (+)
cfap70 cfap70 coding upstream 187205 16779776 ~ 16808650 (+)
LOC113527936 LOC108276743 coding upstream 445941 16545641 ~ 16549914 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding upstream 501153 16400754 ~ 16494702 (+)
tfap4 tfap4,LOC107695712,LOC107601578,LOC107661646,LOC107553667 coding downstream 69585 17067237 ~ 17085755 (+)
trap1 trap1 coding downstream 322090 17319742 ~ 17342075 (+)
ccdc137 NA coding downstream 751522 17749174 ~ 17767669 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding downstream 810620 17808272 ~ 17810490 (+)
mfsd11 mfsd11,mfs11 coding downstream 1023433 18021085 ~ 18043102 (+)
G212446 NA non-coding upstream 67873 16869758 ~ 16927982 (+)
G212449 NA non-coding upstream 68486 16923805 ~ 16927369 (+)
G212445 LOC108276517 non-coding upstream 81282 16842948 ~ 16914573 (+)
G212441 NA non-coding upstream 185105 16810311 ~ 16810750 (+)
G212412 NA non-coding upstream 225727 16769928 ~ 16770128 (+)
G212541 NA non-coding downstream 54726 17052378 ~ 17055807 (+)
G212571 NA non-coding downstream 182142 17179794 ~ 17180253 (+)
LOC117598773 NA non-coding downstream 279002 17276654 ~ 17285842 (+)
G212582 NA non-coding downstream 286631 17284283 ~ 17284486 (+)
G212589 NA non-coding downstream 298756 17296408 ~ 17296874 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 849529 16140330 ~ 16146326 (+)
G211913 NA other upstream 1027096 15918217 ~ 15968759 (+)
LOC117598752 NA other upstream 2004405 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 2374067 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 3501913 13464085 ~ 13493942 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 89632 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 701021 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 1186041 18183693 ~ 18342960 (+)
LOC113528171 NA other downstream 1412189 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 1427527 18425179 ~ 18434528 (+)

Expression


Co-expression Network