LOC113523795


Basic Information

Item Value
gene id LOC113523795
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25570311 ~ 25614308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310266.1
tgtgtaggtgtgtgtggttatgtgtgtgtctgtgtatgggtgtgtgtgtgtgggcaggtgTTACAGAAGGGCGGCACAGGGCCAGGTGTTCTTCCCTGTCAGcctttcacacacacccactgagCATCAGATGAGCGCTGATGAAGTTTTTACTgtcagtttttgcttttttctgtttgaaGCAGGTGGATTTTACAGATGGCTAAGAGCAGCATCTCTCCGAGGAAAACTCTGAAGCGCCTGTTTTTCTCCAAAAGCACCGCAGACCTGCAGGAATGCGGCGAGAAACAGGAGAGCAAATTCCACACACTGTTCAaatggagagagaagaagaaggacaaGAGAGTGGAGTCTCCTGAACCTGCACCAGAAGAAGCGTACGATGGAAGAGACTGGAATGCTGCATCTATTTACGGCACTGTGcccaggtcaaagaAAGGGGTGTTCTCTCGTTCTGAGACTGACCTCCATAAACCCAAGCGCTTTGCCACCTTCTCTTTTGcctggaagaagaagaagaagaacagaaatctgTCTCAGAGCTCCTCAGGTATCAATGTggagtcagaggtcagaggtcacatcAGAGAACCAGAGGAGGAGAAGATCGAAGAACCTTCCCTCAGGCAAGAAGTGCATTCTGAGCTAGCTGAGATTGAATCAGTGGAGAATGATGCTGGAAGCATGCAAGGTGAAGATCCGCATGCAGTAGATACGCTAGATAACACCGAGGGCATGTCTGTTTCACACAGCGACTCCTGGTTTTCTGACTGCGATAGTTGCCTTACTCCTCTAGAAAGTCCTGATTGGCGTTTTGATGAGAATGAAATTGACTCTGACAGAAGTTCCTTAAGCTCAGTTGCCATAATGCCTGAAGGCCGCTGCTCACCAATCGTTACCTCTTGCTTCAGCACTTCAGACCACTCCATCAACAGCAGACTCATAACAGTACACCATCCGCGAAAGTGCATCAGTGCTGATAGCAGGGATCACTCCTCCACACTTCATCAATGGGGCATGGCCAGAAAAAATCCACAGTGGATCGTATCACCTGCCTCCACCTTGGACTGGGATGTAGCTGAGAAATTCGAGGAGGTAAATGCTAACTTGGCCCTGGGCTATCCTGAACAAAGCCCCAGTCAGCTCAATGAAATCACTGATTCTAAAAACAGACCTGCAGATGACAGAGATGTATCACTTTACGAACCTGAGATAGGATTCCACAGGGACCGTTCTCCCATCATTGATGATACCATTCAAGAAAATGAAACTTTTAGGAAAAATGAGGAGAACATGGATCATGTTGCAGGTCCTGATTGTGTTTTATCCATCTCACAAGAAGTTCCTGGAGAATTAGTTCCTCTTTCCTGTCCTGATGATCCCGAGGTCATCTACTCAACAACAGAAATTAACAGCCACTCTTTTGCTGAAAATGATGGAAATCCAGCTTCAGTAAATATTCCTCTAGCTTACCTTGAGACAGACCTCTCACCTCTATTGACAAGAAGAAACATCATGGTATCTGACCCTGACCCTGCAACCTTTGACCTCTTAAGGTCCTCATACACCAGTGGCCTGAATCACAGCAATAACTTCTCAGATCTGCTCTCTGAACCTGACCATCCAAAGCAAGAACAAGAACCTCAAGAACCAACAGTCTCCACCAGTCTCTCATTCGATACGTTTAACAAATCCTTCACTCCTGAAAGCATCCGCTCCACTCCCACAGATCACGTAATGAGATATTCttacatttctgatttttttcaccGATCTTTCTCTGAAGACGACGAATCAGAAAATTGCAAAGGAAACAATTTGGAAGCAGATGAATGTGTTGAAGAAGGAACTAATGAAATCTCAGCTCAAGCCAGTAGATCTGCAGTGTTTGAGGAGACGTTCTATTTATCGGAAGAAAAGGAACCTCACGGTTTTACAGGAAATAATGAGCCTGTGTGTGGGACTGTGATACGTGGAAATGAATTTTATACCATTAATTCGATTAACAGTAATTTGAATGAGTCAGTTAACAGGAAATATTTACAAGATGATGGAAATGCAGTGATGTTAAATACAGAAGAAAACCTTACAAGAAAGCAGGAAAGTGACATGGCAGAACCAAGAAGATTTCAAACCGAGGACATGCTTGGATCTTCTTCCATCACTCCTGAGATAAAGGAGAATGTTGAAGAAAAGACATTTGGCCTGGAACAGGTGTTTCTCAGGGATGAAGGAGATACACAAGTAGAATTAAGTGGAGAAAGTGAAGCACCACCAGGTGAAGTCAACCAACAGCATGCAGATCTCACTATTATCAAACCAGACATGCCAGttctgcaagtgtgtgtgtctgaggaaTGTGTCACTGCCCCTCCCTTCAGTCTGCACAGTGAAGTGTCAGTCACGGACTGCAAGACAGAAACACACCCGTATGTGGAGGCAGGGTCAGGCCACTCCCAAGAGTCTGGATCTCCGATACCACCACAATGGGAGGACTCGACAGGGGGTGGAGCAAATGACAATGTTGTTAAGCTCCATGTGGATAGAGAAGACATCCATACACAGGAGCCAGAGACAAGCTCTGTCACCTATTACCGAGTACCAAGATTTGAATCTGCTGAGCCACGAGGACTACCAGAGACCAGAAACACTTTCCAACAAATTCAAGAGCGACAAAACGGTGCTGAGCAAGAGCACCAAGACGTTGTCGAGAATCCCATCCTCCAATCAGAGAACGCAGCCGATAGCAGTAGAGATACCTGCGAAATCCTCACGGAAAAAAGCAATACTCCAGGAGGAATCGTTGTTTGCATCAGAGAGTTTGGTGAGGAAGATCATCAAGAATCAACAAGAGAGAGGACACTCTCAAACCTTCAGCCTGCACCAATACACACATCATTTGGCTGGTTCCCTCATGCCTCATTCCCTCTCCTCAGCACAGTAATCGAAGAGTCTGACACCGAGGTTCCCGTAGAAACTTGTCCTGAATCAGACACAGACATGAGTGTGTCTCATGTTGGGGTGCTGAGCACCACGTTAACTCTAAAGCCCAAAGTGCCTCAGGAAAGACGAGAAGACGGCAAAAAAGTGCACAAGGTGTCGCTGGTGAACAACAGCAGCACCACAAACAGCTCCGTGCATCAGAGACGTGTTGTGGATGAATTCGAAAATGGGGTTAGAAACGATGACACCGTGGACAGTGGAACCAGACAGGAGCTGGTGGACGACTGGAAGCCGAGGCACGACAAGTACCGTATTTTTGAAGAAGAATCGAGATCTTCTTTAACAGACAGATCGGAGTCTGAGGTTTCAGGTAGCACACACCTGTATTCTTCACTCTCCAGCAGCTCCGAGTATGAACCAACCGTGCgctcctccctctccttctcttctgaGCGAGAGTGGGAAACCCTGCCCTCTGCCGTCTCCTTGGACACAGCTGGTAGTCACGGTAACACTACCTGTTGGAATGCGAGGAGCGAAGTCCAGGTGAGCAGCGAGAGCCAGGCAGGTGGGAGGAGCTGGGCAGGGCTTGCTGAACCTGCCAGGGAGAGTGAGGTAGAAAGAGacggagaaaaaataaatacagactcGTATTACAGAACAGAAGAGACGGACGAATTCCTCTCCGGTGTCTTCAAGGCGACTCGTGTGGAGCTTTCTCCCACTGACGCCGATCCGGAAAGCCCAGCTCTCGCCTCTCCACATGACATGGACACTCTGGTGGACACGCTGAAAAGCATGGCGCCTCCTGTTCGACACCGGTCCCTACGCGGCACCTCCAGTCTGCCCTTCTCGTCTCTGCCGCCGATTGTTGAAGATGCCACCAGCACCGCTGCTCTTGGGGTTGGGGTTTCCGGTATCTCCAGCCCGACCTCTCCTGCACCTGCTGAAACTTTCAACAGCCTGCCGCCGGACCTGGGGTTGAACTGGAGCACCTCCAAAGATATGCGTTCTCCTCTGACAATGATGACCATGCTAAAGGAGCAGCAGGGTCAGGATCCACAGGGACGCTCTCTTATCTTACCGCAGAGAGCTTCAGCTCTCAATAGCATCATCATGCGCAAGAGCTCGCTTCCAAACCTCAAACTGGATGAGGGATCTCACGTTAATGGTATTTTCGGAACCTCACGTCTGGACCACAGCCTGCTGTTTTCCAATTACCGATCCGAACAAACGGAAGAGAACGGCAAGCCGTCAGGTCACCTGTCTCTCTTCCGAGCAGCCTCGTTGCCTGAGGTTAACTCCGGACACGACTACCTCAGCAAGATTTCCGGACCGGACTCGTTGGGGTCTGTAGGGTCCTCTTATGAGCTGTCCTTCCTCACGTCGCCCCCAAGCTCCCTTCCAGGGTTGATCGAGACGTCTCATATCAGCAGGAGCCCTTTGATCATCCACAGCCCCACTCCTGAGAGTCCTACCTCCAACAACACACCTTCTGTGTTGCACAGCCTTTCACCAGAATCATCAGTTAAACCCCCGAGCCTGCAGCGGAGCCTCAGCGCCGGCGCGTCTTCCATCGGATCGCCTCTCCATAATGACCTCGGAAACAAGTTCGGTGTTACCCAGGAGCCTGGACCGGACAGGAACCTACTGGCCAAGTACAAAGCGTTCCCAGATGCCTACCTCACTAAAGAGAAAGAACACGGCAAACTGAACCCTCGGCCTGGGAAGATGTTCATATACAATCGTCCAGGACGGCAAGGACAGAGGATCGAGGTGAAAGGAGACGTGATGGACGCTACGGAGTGGGAGTTTCCAGAAAGCATCTCCATCAGAGTGGTCCGAGGAGGCTGGGTTTTGTACGAGAAGCCGGAGTTTAAAGGAGAGAAGTTTGCACTGGATGAGGGAGACATCGAGCTGACGAATCCATTCAGACCGCCGGAGGACGAGCCGAGAGCCGAGCAGAACGGAGAACAGGAGAACGGAGAACCCACACACGCAGAACCGAGACGCTTCGTCATCGGGTCACTGCGCAGAGCAGTGAGgGACTACAGCGTTCCTGAGATCTGTCTCTTCCCCGAGGAGAACGCTGAGGGAAAGAAAGTGGTGTTCAGGGACACATCAGACGACGCCCGAATCTACGGCTTCCCCATTAAAGCCaactccatcatcatcaacGCTGGGCTGTGGCTGGTGTTCGCAGAGCCGTTTTTCCAGGGCGTCCCGCGGGTCCTGGAGGTCGGAGGCTTCCCAAATCCAGCCGCCTGGGGCGTCACACACCCCTACATAGGCTCACTACATCCTCTCAAAATCGGAGAACCGAGAGTGGAGAGACCCAGCGAGCCGAAACTGGTGATCTACGACAAACCGTATTTCTCCGGGAAAAGCCGAGAGATTTACACCAACATGAGAGACTTCATAACCAAAACAGACCAACAGCAGACGGCCTTCATGTACAGCGTCGGGTCCATGAAAGTCATCGGtggcgtgtgagtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310266.1 True 5443 mRNA 0.50 11 25570311 25614308

Neighbor

gene id symbol gene type direction distance location
prdm1b LOC108260590 coding upstream 15339 25541731 ~ 25554972 (+)
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding upstream 81607 25388777 ~ 25488704 (+)
trnai-uau_8 NA coding upstream 214719 25355500 ~ 25355592 (+)
trnai-uau_7 NA coding upstream 215443 25354776 ~ 25354868 (+)
c13h17orf75 c2h17orf75,cunh17orf75,zgc:153240,LOC107729180,LOC107590573,LOC107690268,LOC107567861 coding upstream 291944 25268864 ~ 25278367 (+)
crybg2 LOC108255824 coding downstream 2115 25616423 ~ 25626609 (+)
zgc:101785 NA coding downstream 15053 25629361 ~ 25641443 (+)
sgo1 LOC108258632 coding downstream 61614 25675922 ~ 25683612 (+)
LOC113523776 LOC108276501 coding downstream 82074 25696382 ~ 25704937 (+)
LOC113523775 NA coding downstream 92556 25706864 ~ 25710104 (+)
G216817 NA non-coding upstream 174428 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 303201 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 339839 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 381268 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 384909 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 181996 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 285766 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 453440 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 465846 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 526269 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 772633 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1031194 24529679 ~ 24539117 (+)
G216197 NA other upstream 1112307 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1240311 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1649908 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 643063 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 691138 26305446 ~ 26306768 (+)

Expression


Co-expression Network