sgo1 (LOC108258632)


Basic Information

Item Value
gene id sgo1
gene name LOC108258632
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25675922 ~ 25683612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310267.1
GGAAATGACGCAAGACTTTGGGTTCGACCAATCAGAAAGCTCACAGCGCGCAGTTCGAATGTCAACGTCCGCCGAGAGGAAAACAGCGCACCGGAAGTGAAGCTTGTCGGTTTGTACTGACGCCCAGTGAGCCATGGTTCGCGAGCGGGTCGTCCAGAAGAAGTCGTTCCAGCAGAGCCTGGACGACATTAAGgagaagatgaaggagaagcgGACCAAGCGGCTGGCGAGTGCGAGTGCTGCGAGTCGAGGACTTTCCAAACTGAAGACCGCGGcCGCGGTGAAGCCGTTCGTGCTGAAGAGCGTGCAGGTGAATAACAAAGCGCTGGCCCTGGCTCTGCAGGCGGAGAGGGAGAAGGTACGGCAAGCGCAGGGGATCATCCTGCAGCTGAAGAGGGAACGACAGGCTCTCATCTTCCACCTGCTGATGATGAAGAGGGCTCtgagtgaagggggcgtggccagaagTGCACAGACGTTCTCTGCAGAGGAGCCGAAGCCGGACCTCACGCAGTCGACCTGCCCCAGAGGCGTGGCACAGGCTGACGCTGTCACTCAGGAGGAGGAGCTCCGCCCCCTCGAGTCGCTCACACAGCAGGAGGAAGaCGGAGCTCTTGGAGGATCCGGTAACGGCGAGGCGTCTTTGCCTCCCTCCGTCGGAATGCGGCGGCGGCGCGATGGACGGAAGCGCTCTGAGCGGAGGCGGAGCTCGCTGTTTAACCCCGCCTCCGTGGATGTTTGTGTAACGGAAGAGGTGGAGCCTCAGAACTCCGGCGTGGCAGAGGATCCCGAGCTCCACCTGGATACGGGGGTTGGCGTTGCAGCCGACGTCGCTGAGCACGAAGGTACCGCTGAAAACACCACAGCCgggggtcaaaggtcactcCGGACATATTCCGTTGATGCGTCCAAGGCGGCGCTGGACTCTGAGCTTTCGGACCTTGCCGCCGTGCAGCACTCGACCCCGGAACCGCCGCAGCGCCGCGCGTCCAGACAGACGAAGAGGAAAGCGGCGCAGTCGGCTACCAAACCGGAGCGAAGCCGCAAAGTGGAGCGAGCGCCGCTGAAGAAACCCTGGGAGAAGCCTCGTGCTCGCTCTAAGAGTCGCGCGGCGGCGGGCGGTTCTGcatctggttctggttctggttctggttctgctCCCAGCGACCGGTTGAACTCCTCACTCGGCGGCAACGACACGTTCGACTTCGACTGCGAAGAGGCCGTCCACATCACGCCTTTCCGAGGAGGAGGCAAAGCCTCAGAAGCCCCGCCCTCTCCTATCACCATGCCCTCTCctgtagctccgccccctcccGCCCCCGCAGACGAGGAACCCAGCTCTTCAGAAGCAGAACAGGAAGCAGACGACAGCCCGTACGTTCCAGACAGGAAGTTCAGACGGACTCGCGATCCTCCGCCACGCCGCGCCCGCTCCAAGAGGAGGTCCGCTCAGACGAGAGGGAAGGAGAACACCGGACCGAAGCAGAACCGCACGGTTCCAGAACTCTCTGGAAACGTCAAAACACGCACAGAGGCTGCAGACGCCACTTTGTCGATCCACACAGAACTACAGCTCCCACAATCCCCTGCTGCAGACCTGCAGTTCCCAGAGTCTCTGTTATCTCCGTCTGCTGAGAAGATCAACCTGTCAACTCCAGACCAGGAGAGTGCTAAAGcTGCTGCGTCTGGAGAGGAAATGGCGTCTCCTCCACCCGACATCCCGTCTGCGGAGGCGGGGCTTATGATGATTGACAGTCCTTTATTTGAATTGACAAACCGCAGGAACCAATCATCAGAGCAGGAGAACAGCATGGCTGTGGTGATGGACAAGTCGAGGAGGAGAAAAGGTGGTCTCGTTGTTCGCTCCTGTCTGGGCTTGGCTTTGAGTGACGTGACAAATCTCTCCCCCGCAGCCTATCAGACGCCTCTGCAGGGCCGAGACTCCACCCCCAGCCTCGGCCGCAAGAGACGCTGCACGAGCGTCGTCAGCTATAAGGAGCCGTCGATCAGCTCGAAGCTGCGGCGTGGAGACAAGTTCACAGACACGCGTTTCCTGCGCTCGCCCATCTTCAAGCAGAAATCCCGGCGCTCCATTAAATCCATGGAGAAATACAACGAGTCGTTCGTGGGCTGCCGCTGAACGTTTTAACCTTCACAGCGTCCTGACTCGCTCCTCTCTTCCTCCCGCATTACAACGTTGTACATCATCTTTACTCTGTAAAtatgaaattgtgtgtgttaactcattttaatgaaaaaccatgtaaaataaagttagtgtttttttatgAACCA
>XM_034310268.1
GGAAATGACGCAAGACTTTGGGTTCGACCAATCAGAAAGCTCACAGCGCGCAGTTCGAATGTCAACGTCCGCCGAGAGGAAAACAGCGCACCGGAAGTGAAGCTTGTCGGTTTGTACTGACGCCCAGTGAGCCATGGTTCGCGAGCGGGTCGTCCAGAAGAAGTCGTTCCAGCAGAGCCTGGACGACATTAAGgagaagatgaaggagaagcgGACCAAGCGGCTGGCGAGTGCGAGTGCTGCGAGTCGAGGACTTTCCAAACTGAAGACCGCGGcCGCGGTGAAGCCGTTCGTGCTGAAGAGCGTGCAGGTGAATAACAAAGCGCTGGCCCTGGCTCTGCAGGCGGAGAGGGAGAAGGTACGGCAAGCGCAGGGGATCATCCTGCAGCTGAAGAGGGAACGACAGGCTCTCATCTTCCACCTGCTGATGATGAAGAGGGCTCtgagtgaagggggcgtggccagaagTGCACAGACGTTCTCTGCAGAGGAGCCGAAGCCGGACCTCACGCAGTCGACCTGCCCCAGAGGCGTGGCACAGGCTGACGCTGTCACTCAGGAGGAGGAGCTCCGCCCCCTCGAGTCGCTCACACAGCAGGAGGAAGaCGGAGCTCTTGGAGGATCCGGTAACGGCGAGGCGTCTTTGCCTCCCTCCGTCGGAATGCGGCGGCGGCGCGATGGACGGAAGCGCTCTGAGCGGAGGCGGAGCTCGCTGTTTAACCCCGCCTCCGTGGATGTTTGTGTAACGGAAGAGGTGGAGCCTCAGAACTCCGGCGTGGCAGAGGATCCCGAGCTCCACCTGGATACGGGGGTTGGCGTTGCAGCCGACGTCGCTGAGCACGAAGGTACCGCTGAAAACACCACAGCCgggggtcaaaggtcactcCGGACATATTCCGTTGATGCGTCCAAGGCGGCGCTGGACTCTGAGCTTTCGGACCTTGCCGCCGTGCAGCACTCGACCCCGGAACCGCCGCAGCGCCGCGCGTCCAGACAGACGAAGAGGAAAGCGGCGCAGTCGGCTACCAAACCGGAGCGAAGCCGCAAAGTGGAGCGAGCGCCGCTGAAGAAACCCTGGGAGAAGCCTCGTGCTCGCTCTAAGAGTCGCGCGGCGGCGGGCGGTTCTGcatctggttctggttctggttctggttctgctCCCAGCGACCGGTTGAACTCCTCACTCGGCGGCAACGACACGTTCGACTTCGACTGCGAAGAGGCCGTCCACATCACGCCTTTCCGAGGAGGAGGCAAAGCCTCAGAAGCCCCGCCCTCTCCTATCACCATGCCCTCTCctgtagctccgccccctcccGCCCCCGCAGACGAGGAACCCAGCTCTTCAGAAGCAGAACAGGAAGCAGACGACAGCCCGTACGTTCCAGACAGGAAGTTCAGACGGACTCGCGATCCTCCGCCACGCCGCGCCCGCTCCAAGAGGAGGTCCGCTCAGACGAGAGGGAAGGAGAACACCGGACCGAAGCAGAACCGCACGGTTCCAGAACTCTCTGGAAACGTCAAAACACGCACAGAGGCTGCAGACGCCACTTTGTCGATCCACACAGAACTACAGCTCCCACAATCCCCTGCTGCAGACCTGCAGTTCCCAGAGTCTCTGTTATCTCCGTCTGCTGAGAAGATCAACCTGTCAACTCCAGACCAGGAGAGTGCTAAAGcTGCTGCGTCTGGAGAGGAAATGGCGTCTCCTCCACCCGACATCCCGTCTGCGGAGGCGGGGCTTATGATGATTGACAGTCCTTTATTTGAATTGACAAACCGCAGGAACCAATCATCAGAGCAGGAGAACAGCATGGCTGTGGTGATGGACAAGTCGAGGAGGAGAAAAGCCTATCAGACGCCTCTGCAGGGCCGAGACTCCACCCCCAGCCTCGGCCGCAAGAGACGCTGCACGAGCGTCGTCAGCTATAAGGAGCCGTCGATCAGCTCGAAGCTGCGGCGTGGAGACAAGTTCACAGACACGCGTTTCCTGCGCTCGCCCATCTTCAAGCAGAAATCCCGGCGCTCCATTAAATCCATGGAGAAATACAACGAGTCGTTCGTGGGCTGCCGCTGAACGTTTTAACCTTCACAGCGTCCTGACTCGCTCCTCTCTTCCTCCCGCATTACAACGTTGTACATCATCTTTACTCTGTAAAtatgaaattgtgtgtgttaactcattttaatgaaaaaccatgtaaaataaagttagtgtttttttatgAACCA

Function

NR:

description
shugoshin 1-like isoform X1

GO: NA

KEGG:

id description
K11580 SGOL1; shugoshin-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310267.1 True 2298 mRNA 0.59 11 25675922 25683612
XM_034310268.1 False 2232 mRNA 0.59 11 25675922 25683612

Neighbor

gene id symbol gene type direction distance location
zgc:101785 NA coding upstream 34479 25629361 ~ 25641443 (+)
crybg2 LOC108255824 coding upstream 49313 25616423 ~ 25626609 (+)
LOC113523795 NA coding upstream 61614 25570311 ~ 25614308 (+)
prdm1b LOC108260590 coding upstream 120950 25541731 ~ 25554972 (+)
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding upstream 187218 25388777 ~ 25488704 (+)
LOC113523776 LOC108276501 coding downstream 12770 25696382 ~ 25704937 (+)
LOC113523775 NA coding downstream 23252 25706864 ~ 25710104 (+)
LOC113523761 leg,LOC108276513 coding downstream 27583 25711195 ~ 25717139 (+)
LOC113523792 grap2 coding downstream 227070 25910682 ~ 25922856 (+)
LOC113523801 LOC108276446 coding downstream 247819 25931431 ~ 25938225 (+)
G216817 NA non-coding upstream 280039 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 408812 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 445450 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 486879 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 490520 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 112692 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 216462 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 384136 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 396542 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 456965 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 878244 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1136805 24529679 ~ 24539117 (+)
G216197 NA other upstream 1217918 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1345922 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1755519 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 573759 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 621834 26305446 ~ 26306768 (+)

Expression


Co-expression Network