crybg2 (LOC108255824)


Basic Information

Item Value
gene id crybg2
gene name LOC108255824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 25616423 ~ 25626609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310269.1
actcagcGTTACTCAGTAAACGTGTACACtgacatataaatataaataaaaagacatatTCATAGTTCCTTCAGCATGCTGAGCTGCACACACAGGGCTCTGGTTGTAACACATCTGCGCTGTATTCATCAGTTCACGGGATAAaatgatgacatcacacacatcacacacacatttatacaggtATGTCTGAAACACACGTGACGCTGTGACCGTGGAAACACCGGCTACGTTAAGTTTATGGAAGCTCTGGTGGTGTGCAGGACCTGAGCAACCCCATGGTGGTGATGTTCGAGATGTCGAgtgaggaggtggaggaggagcacACGTTCGAGGTGACGGAGGCCGTGCCCGATGTGGAGCTGTTTGGTTTCCACACGTCTACGCGCTCCATCCACGTGATCAGTGGAGCGTGGGTGGCGTACTCTCACGTGGATTACTCAGGAAACCAGTACGTCCTGGAGAAAGGTTTCTACAACAACTGTGCCGACTGGGGCTCGGGAGATAACCGGATCTGCTCCATCCAGCCCATCCTGCCCGCCCTGGCTGATTCTCAGGCTGTACGCAGCGAGCTGCTGTTGTACACGGAGCCGAATTTCCAGGGGACGTGTCAGGTTCACTGTGAGAGCGAGGAGTTCCTGTCTGAGAGACGGACAGTGCAGTCCTGCAGGGTGGTGGGAGGAAGCTGGGTTCTGTACGACAGGAACAGCTTCTCGGGGAACCAGTACGTTCTGTCAGAAGGAGATTACGCGAATCTCACCAGCATGGGCTGCGCCGATAACTGCGTCCTGAGATCTGTTAAACCCGTCCCGATCTTGTTCACAGTGCCGGCCATCTCTCTGTACGGTTTGGAGTGTTTCGAGGGACGCGAGGTCTCCATGGAAACGGAGGTGTCCAGTATGATGGAAGAAGGGTTTaatcctcacttcctgtctgtgagGGTCAACAGCGgctgCTGGGTGCTATGTGAGCACTGTAACTACAGGGGGCGCCAGTTCCTCCTCGAACCCATGGAGATCACAAACTGGCCCAAGTTCAGCTCGCTCACATCCATCGGCTCCTTGTACCCGATCCGAGAGaagaggCGAGTGTTCCGGATCCGTTATAAGGAGAGCGGACTCTACGTGTCGGTGCAGGGCGGAGTGGACGCTTTGAAGACAGGACGCGTGGTGGTGTCTGAGAACGTGGAGGGTCTGAGCGACGTGTGGTTCTATCAGGACGGCCTCATCAAGAACAAGttggcaCAGGCGATGAGTCTGCAGGTCGTGGGCAATGTGGAACCGGGAGCGAAGGTggttctgtggtcagaaactCGAACTCCTGTTCAGACCTGGAGCGCCAAACTGAGCGGCTCCATCTCCAGCCTCACCTTCCCCGGCCTGCTGCTGGACGTCAAGGgtGGTAAAACGTACGATAAGGAGCATGTGATTGTTCGGAACGAGGCTGAAGACACCCCCACTCCACTATGGGACATAGAGTTCatctaagccccgcccccttttcaGTCACTTTGacctttatttaatatttattcagtcATCAAGGACAACACATTCAGCACATGAAGGTGCAGGTTACATCAGCTTGAAAAATATTATGACGTCTGTCCACATGGGGGAGCTCGAGagtaaacaaagaaacaaaaaatctcCAATTAACTCCAGAGCGTAAAGTTTTAATGCCAACGTTTTGGATTAATTTGCATCTTTTCAGATTTAGTTTTTTTGCTGATGTGGAACACGGTGCAGTTACAGTGAagaaatttacacacaaaaacatgaaattaaatagGAAAGTTCTATGTCTGGTGCACAAATATTGTTAGAAATTTACTTGGGtgaactttttaactttttagcCCAGAAATCATTAACTAGTATTACAGTAACCCATTAAACATGCTAACACATGAACTAGCACAACAGTAACCATGCTAATTCCTAAgacattacagtaaacaactagcattacagtaaacatgctaacacaTGAACTAGCATTactttacatatataaataatgtcgtttgaaaaaattaatgagatatgaaacataaaaataattagctTTTACATAAACATACTAACACATGAACTAGCATTGTTGTAAATAACTAGCACACATTTAAACCTGCTTAATTATGACCTGCATTGTATTAAATTGGCTAACAGATGAATTAGCATGATAAGCGGGCTAATCATGAAATAAcaaaacttatttttatttatataaatcagtATCGTAGTGCATTTGAAGGCTACAAGATGTGAAATTAGCGTCTGTCACAACAGCATGGCGGCCATTTTAactatttctgtttgtttttttgtacgTTAGCTCACACTGTTCTTCCCCTCGCTGCGATTATCGTTACATTGGTCTTAGCTACGAACTGCTTAACAGCTAAGATCGCAGTTATGCTAAGTGTGTTTACTGACAGTGTTAAGTTcataaaatgatgaataaagGTATGTAGAGGTCACCTGAGGTCACGGCGGAAAGGTGGTGAGAGCTTGAGAACCGCTTTCTGAGCAGATTTACGCTGGAACAAGAGCGAAACAGCTCGGAATGCTCGGAACATTTTGCCTTTTTGGACACTGACTTTGTTTATAAcgctttataacacattataacgcTTTATAACGTGGACTTTGATGAaacagttttattgtttaacATGTAAATGTGATATTAATAATGAAGACACTCACATTAACAATAATGTCTATTCTAACTGGGGTGTGTgctggatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggtttAACTTTCATTAAATGCCAAATGACACACGTGTTACTCTGAGTATTCATCCATCAtccatggttttttttaaacattgttctgtaacttttatttttcaaagtGCAGTATGAATTATTCTGTAACAGGGAGTGgattcaatttttaaaaataaaaataaacaacacaga

Function

NR:

description
PREDICTED: absent in melanoma 1-like protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310269.1 True 2969 mRNA 0.45 10 25616423 25626609

Neighbor

gene id symbol gene type direction distance location
LOC113523795 NA coding upstream 2115 25570311 ~ 25614308 (+)
prdm1b LOC108260590 coding upstream 61451 25541731 ~ 25554972 (+)
LOC113523790 epha10,LOC108273957,LOC108413484,LOC107688368,LOC107602377,LOC107654743 coding upstream 127719 25388777 ~ 25488704 (+)
trnai-uau_8 NA coding upstream 260831 25355500 ~ 25355592 (+)
trnai-uau_7 NA coding upstream 261555 25354776 ~ 25354868 (+)
zgc:101785 NA coding downstream 2752 25629361 ~ 25641443 (+)
sgo1 LOC108258632 coding downstream 49313 25675922 ~ 25683612 (+)
LOC113523776 LOC108276501 coding downstream 69773 25696382 ~ 25704937 (+)
LOC113523775 NA coding downstream 80255 25706864 ~ 25710104 (+)
LOC113523761 leg,LOC108276513 coding downstream 84586 25711195 ~ 25717139 (+)
G216817 NA non-coding upstream 220540 25395622 ~ 25395883 (+)
G216672 NA non-coding upstream 349313 25262056 ~ 25267110 (+)
G216686 NA non-coding upstream 385951 25230204 ~ 25230472 (+)
G216675 NA non-coding upstream 427380 25166500 ~ 25189043 (+)
G216674 NA non-coding upstream 431021 25157680 ~ 25185402 (+)
G217035 cacna1i,LOC108276491,LOC102291313,LOC103368285 non-coding downstream 169695 25796304 ~ 25890447 (+)
G217082 NA non-coding downstream 273465 25900074 ~ 25901489 (+)
G217175 NA non-coding downstream 441139 26067748 ~ 26072680 (+)
LOC113523785 NA non-coding downstream 453545 26080154 ~ 26086876 (+)
G217170 NA non-coding downstream 513968 26140577 ~ 26146174 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other upstream 818745 24797254 ~ 24797678 (+)
si:ch211-157c3.4 LOC108278842 other upstream 1077306 24529679 ~ 24539117 (+)
G216197 NA other upstream 1158419 24457070 ~ 24458004 (+)
rbfox1 rbfox1,LOC107733849 other upstream 1286423 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 1696020 23894247 ~ 23920403 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 630762 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 678837 26305446 ~ 26306768 (+)

Expression


Co-expression Network