tac4


Basic Information

Item Value
gene id tac4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18360781 ~ 18368589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310283.1
TCCAGAATATCAGATGAAATAACTTACAGCatatgtctgttttattttatttcagttactgtTTCAAATTATACAATGGAGCTTTTTAAACTTTGCATTCTGGCCTTTGTTCTATATGCACAGCTGCACACTGGTGTGTCAAGTTTCAGTGAGGACATGGATATCTGGTCCCTGGAGAACTGGCAGGGTGATCCAGCAGAAAGTGGTTTCACTCTCCATTTTGATGACCTGCTGAAGCGCTCCAAATCACAGCAGTTTCATGGGTTAATGGGCCGAAGCTTAGATATTTCTCAACCCCTGCAACTTGGTCGGAAAAgAAACAATGGAGAGATGTTTGTTGGACTGATGGGCAAGAGGTCTTCAAAGGGAGATTTTGAAGAGGAACCAGACAAGCCACAGTAATGCTAATTATGCAAACAACATGACTGGTTTTGCCTGGCTATCATTATGTAATGCTCTCCTATCTAATttatattcagaaaaaaagagttttcAATAAATCACTGAATTTGTAAACCATGTTATTTAT
>XM_034310284.1
GAATCACTGATGCTTTGGGACCACTGATGATTCAGGGACTCATATGAAGATTGATGGcatgaattctgctaaCTGCACACTGGTGTGTCAAGTTTCAGTGAGGACATGGATATCTGGTCCCTGGAGAACTGGCAGGGTGATCCAGCAGAAAGTGGTTTCACTCTCCATTTTGATGACCTGCTGAAGCGCTCCAAATCACAGCAGTTTCATGGGTTAATGGGCCGAAGCTTAGATATTTCTCAACCCCTGCAACTTGGTCGGAAAAgAAACAATGGAGAGATGTTTGTTGGACTGATGGGCAAGAGGTCTTCAAAGGGAGATTTTGAAGAGGAACCAGACAAGCCACAGTAATGCTAATTATGCAAACAACATGACTGGTTTTGCCTGGCTATCATTATGTAATGCTCTCCTATCTAATttatattcagaaaaaaagagttttcAATAAATCACTGAATTTGTAAACCATGTTATTTAT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310283.1 True 529 mRNA 0.39 5 18367397 18368589
XM_034310284.1 False 478 mRNA 0.41 6 18360781 18368589

Neighbor

gene id symbol gene type direction distance location
LOC113527984 LOC108258094,LOC103035820,LOC108438916 coding upstream 297120 18062037 ~ 18063661 (+)
mfsd11 mfsd11,mfs11 coding upstream 317679 18021085 ~ 18043102 (+)
LOC113528388 myadml2,LOC108275479,LOC103027436,LOC107671249,LOC107571305,LOC107717480,LOC107552108,LOC107675441 coding upstream 550291 17808272 ~ 17810490 (+)
ccdc137 NA coding upstream 593112 17749174 ~ 17767669 (+)
trap1 trap1 coding upstream 1018706 17319742 ~ 17342075 (+)
LOC113528424 NA coding downstream 80697 18449286 ~ 18451161 (+)
sept9a sept9,LOC108411966 coding downstream 103795 18472384 ~ 18558892 (+)
tnrc6c1 tnrc6c,LOC107724432 coding downstream 264909 18633498 ~ 18697593 (+)
yipf2 yipf2 coding downstream 424715 18793304 ~ 18801817 (+)
clpp clpp,LOC107753176,LOC107590418,LOC107689627 coding downstream 460704 18829293 ~ 18836201 (+)
G212899 NA non-coding upstream 377975 17980998 ~ 17982806 (+)
G212889 NA non-coding upstream 461800 17898781 ~ 17898981 (+)
G212870 NA non-coding upstream 474499 17886009 ~ 17886282 (+)
G212804 NA non-coding upstream 534431 17819418 ~ 17826350 (+)
G212783 NA non-coding upstream 578853 17781712 ~ 17781928 (+)
G213191 NA non-coding downstream 148724 18517313 ~ 18565782 (+)
G213192 NA non-coding downstream 161770 18530359 ~ 18534344 (+)
G213221 NA non-coding downstream 337828 18706417 ~ 18713626 (+)
G213244 NA non-coding downstream 477627 18846216 ~ 18898291 (+)
G213314 NA non-coding downstream 590441 18959030 ~ 18960740 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other upstream 17821 18183693 ~ 18342960 (+)
cenpx cenpx other upstream 627775 17698673 ~ 17733006 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other upstream 1247625 17087284 ~ 17113156 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other upstream 2214455 16140330 ~ 16146326 (+)
G211913 NA other upstream 2392022 15918217 ~ 15968759 (+)
LOC113528171 NA other downstream 41252 18409841 ~ 18415347 (+)
zgc:163143 NA other downstream 56590 18425179 ~ 18434528 (+)
smim22 NA other downstream 546137 18914726 ~ 18919942 (+)
G213491 NA other downstream 775485 19144074 ~ 19145240 (+)
gng13b NA other downstream 932765 19301354 ~ 19313218 (+)

Expression


Co-expression Network