igf2bp1 (igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494)


Basic Information

Item Value
gene id igf2bp1
gene name igf2bp1,LOC108412303,LOC107717213,LOC107667758,LOC107582884,LOC106607494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9840890 ~ 9879885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034310315.1
acatacacacacgtcgATGAGATCCGGCCCCTTCTCCAGCTACTCCGACAGACCACGTGGTTTCCTCtttgcaaacaaaaaaattagtaaATTCGAGTCGCTGTAGAGGCGGTGCCGTCGCCAGGCAGTAGGATCTGTATGACAGTGCAAGGGTACAGCTCTACGCTGAGgggcagatagagagaaagagaaaagaaattctCGCGATCCCGCCATACTTCTCTACCACTATTCCACCATAACCACCATCACATTAATACAGAGCAATACCGTTTGCTACACGGTGCAGGAAATTCGCCAGGATTGCTACAATCAAGGATTCTCCACTCGCCGCCGGACTTCATCGGACTGCAACGTTAGTGTTAGGCGAACTTTCCCCGTATTATTTTAAGATTCTTCTTCGGAATTCTTTCGTTTTCAGTTGCAACTCGTTGTAATTTACAcgtgcttttcattttttagcAGGCTCAATATATATTTTGGACAGATAGCCCCCCTGTTtgtagaaaagtttttttttttctgatttttttttttttaaaaacgggGAAAgcattgaatttttttccacaatgaACAAGCTATATATTGGAAATCTGAATGAAAATGTGACCGCAGAGGACTTGGTTAAAACCTTTGAAGACTACAAGATTCCTTACTCTGGGCAGTTTCTAGTGAAAACGGGATACGCGTTTGTTGATTGCCCGGACGACCAATGGGCTATGAAAGCAATTGAAACATTTTCTGgtaaAGTGGAACTTCACGGCAAACGAATTGAAGTAGAACATTCTGTCCCTAAGAAACAAAGGACCAGGAAACTCCAGATTAGAAACATTCCACCGCATTTACAATGGGAGgtgCTTGATGGTCTACTTGCACAGTATGGAACTGTTGAGAACTGTGAACAAGTTAACACAGAAAGTGAGACAGCTGTGGTGAACGTCACTTATGCGACTCGGGAGCAGGCCAGACAAGCAATCCAAAAGCTGAATGGCTACCAGTTTGAGAACAACACTTTGCGCGTGTCCTACATACCTGACGAGAGCTTGGATGTTGACTCCCAGCGCAGCCCTGACAATGGTCGGCGCTCTGGATACGGTGCCCGTGTCAACTCCAGGCAGGGTGCCCCTGGCACAGGGATGCCCTCCAAGCATCAGCACACTGATATACCTCTCCGTTTGCTTGTACCAACCCAGTACGTGGGCGCCATCATCGGCAAAGAGGGTGCCACCATCCGCAACATCACCAAGCAGACTCAGAGCAAGATTGATGTCCACCGTAAAGAGAATGCTGGGGCTGCAGAAAAGCCCATCAGCATCCACTCGACTCCCGAGGGCTGCTCGGCGGCCTGCCGCATGATCCTTGACATCATGCACCAGGAAGCCAAAGACACCAAAACTGCTGATGAGGTGCCTCTGAAGATTCTTGCCCACAACAACTTTGTAGGTCGTCTGATCGGCAAAGAGGGGCGCAATTTGAAAAAAGTGGAACAAGACACTGACACTAAGATCACCATCTCACCGCTGCAAGATCTGACCCTGTATAACCCTGAGAGAACCATCACAGTGAAAGGTGCCATTGAGGCCTGCTGCCTGGCCGAGCAGGAAATCATGAAGAAAGTGCGAGAGGCCTATGATAATGACATCGCTGCCATGAATCAACAGACGCACCTCATCCCTGGACTGAACCTTGGAGCGCTTGGTCTTTtccctccatcctcctccatgCCTCCTCCTCCCCCTGGAAACCCTGGGGTTTGTCCCCCATATGGCTCCTTTGGGGCTCCTGAGCAGGAGACAGTCCATGTGTACATCCCAGCACAAGCAGTGGGAGCCATCATCGGCAAGAAGGGCCAGCACATTAAGCAGCTGAGCCGCTTTGCTGGAGCCTCCATTAAGattGCACCAGCGGAGACACCTGATTCAAAGATGCGCATGGTCATTGTTACTGGTCCACCTGAGGCCCAGTTTAAGGCTCAGGGAAGAATATATGGCAAGCTGAAGGAGGAGAACTTCTTTGGGCCGAAGGAAGAAGTGAAGCTGGAGACGCACATCAaagtagcagcagcagctgctGGCAGAGTTATTGGGAAGGGTGGAAAGACGGTGAACGAGCTACAGAACCTAACTGCAGCTGAGGTGGTGGTTCCTAGAGAGCAGACTCCTGATGAGCAGGACCAGGTTATTGTCAAAATCATCGGCCACTTTTATGCAAGTCAGCTGGCCCAGAGGAAGATCAGAGACATTTTGACACAAGTTAAGCAGCAGCAGAAAGGTGGCATGGGAGGCTCTCAGGCATCTCACCCACAGAACCTGTCAGAGCTTGGGCCCCACCAGGGAATGACCCAAGAGCCTAGGAGGAAGTAACGGGCTCCAGCCCAAAACTGGACGGACAgacggatggacagacagaggagAAACAGCGgactgactgagagagagcGACACACAGACCCAGCGGTAGACAGGGAGAAATGAGCATTTAACAAAGAGGggaataaaaaggaaataaaaatgccTGAGAGAGTACAAAAGTTTAGAGAAAAGAAACTAGAACTTTGAGTgatgtaaaaatagaaaaaaaaaagaaaagagagagagaactaggAAACAGAGACCAGATGCCAGGTCGACTGACTGGAGATGGCAGGGACTCCTTGTGGCAGCTTATGAAATAATCATGGCTACATGGCCTTGAGAGTCCTGAGAGAAGCTCTCACGAATTGTATCACGCTTAGGGTACCCCTGCCATCACCAGTCACTCAAGTATTTTAAGGGTGTTTTTTTAAGAAGAGCTATATGTATAGAAATGTTTATTCAGAggtattataatgaaatgcagtgAGGCAGAGGTGGGGAGAGGGGAGCAGAGAACCCATCACATCGAGTCAATAAAGTGGCTCATCCTTTGCCTACGGGAAATTACGGGAGGGGCCATAGCTGTTAACACTGCTCTTTAAGTCCCTGGCAGTAAACTGTTGGGGGTAAGGacaaataaagaagaagaaaaatgaggTTGTAAATATAATCTTCATGAATTTGTATTGAAGCACTGTTGAAGCACAGTGAGGGTACAGTAAGTGGGCGGGCCGAGGCTGACCCTGCAGTTCTATTGCAGAGGCTCAGCTCCGAGACGTAAACTTCACCTCCAGCCCTGAACTACGCCCGTGACGCTTGGCGGTGCGTGGCCCACACCCAAAtggcatattttatatatattatatatatatgatatgtgaGTTAACCTGGCCCCTCAGAGAGCAGAGAAAACGGCAGTGGAAAGGGAATGTGGCACTGGGATCAGACCATCTTTCACAGATATTTTGAGATATTTAAAATTAGCTTTCAGTATCTGGGTTTTGCTGTATGTTTTTAACCAAGATTTAACTGAAAGCCAATGAGAGAGCACTGAGCTGCTGagttctcataaaaaaaaaaaaaaaaaaaatctgacttttCGTGCGTCGGAAAGATGGAATGGGATTAAATTATCATCCAAATAATACAAATTTGACTTTGACAGCAGGAGCCAATCTTCGATCAGTCCTGTTAACTTGAAGGCCTTTGATTTAAGATCACATGAAAGATGCAGCCTCCCATGGCCCAGCTCTCCACCTGCCTTTAGGTCAGAGGTCAACAGCAGGTGATGTTAAAATGGCTtctgcgctctctctctctcccctactCCATTCGATGTATGCTGATGAGGAGGCCAGAAAGCTGGCTTTCTTCACTCATCTTCGAACAGATtagatagaaaaaaatagaaacctACCTCAGGGTATTGTTACCTCAGTATTCCTaacggctttttttttttttcctttttttttttttgctggtgttTTATATAAAAGCTGATAGtcctgaatattttatttttttaaggaagaaatatttttagttattgttggatatttttttttcttccccctaGTTTtcgcgtgtatgtgtgtgtatggatggcACCCCCCACCTTTCCACATTTAATTTCAAAAAGATCCATATAGGCAAGAGGCATGAATTTCCTGGTATTTGCTGAATCAGTGCTAGCAGGTTCTTCACAGTTGTCTTTGGACCTATATCCAACTGAATTTGAAGTGTCTGGCTTTTTGTGTAGTGGTGCGACACAGTCATGGCATTTTATCACCTGACTCAAACGAGCATGAACAGCTTACAAATGTTTGACATACTGGCTTTTATTAATATCTGAAAGTGGCTCTGGCTGAAGATGAGTTGCACCTCTATCTGGCTCTATTTCATTGGTTTCTCCAGCAGTGTTGCAATGAATGTTATGCACTGAAGGCCTGGAGTCTGCCTCGGTTGCCAGGTTTGTGTCATGACTGTATGGTGAGAAGCAGCCCAGTAGCATCTCAGTAAATACATCGAATTATATATCAAGTTTAGGTTCAGCATAGTACTTACTTATCCTATATGTCCGTATGATGGGAtgcgtgtttttgtttttgtttttttttttttttttttt

Function

symbol description
igf2bp1 Predicted to enable mRNA 3'-UTR binding activity. Acts upstream of or within neural retina development. Predicted to be located in several cellular components, including filopodium; growth cone; and lamellipodium. Predicted to be part of CRD-mediated mRNA stability complex. Predicted to be active in cytosol and nucleus. Is expressed in diencephalic white matter and head. Orthologous to human IGF2BP1 (insulin like growth factor 2 mRNA binding protein 1).

NR:

description
insulin-like growth factor 2 mRNA-binding protein 1

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0051028 mRNA transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030426 growth cone cellular_component
GO:0030175 filopodium cellular_component
GO:0005634 nucleus cellular_component
GO:0070937 CRD-mediated mRNA stability complex cellular_component
GO:0030027 lamellipodium cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K17391 IGF2BP1; insulin-like growth factor 2 mRNA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034310315.1 True 4488 mRNA 0.46 15 9840890 9879885

Neighbor

gene id symbol gene type direction distance location
ube2z ube2z coding upstream 13881 9814084 ~ 9827009 (+)
atp5mc1 atp5g1,LOC108256653,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887 coding upstream 29309 9806798 ~ 9811581 (+)
eve1 LOC108275867,LOC108412315 coding upstream 58968 9779523 ~ 9781922 (+)
nfe2l1a LOC108279857 coding upstream 352349 9477811 ~ 9488541 (+)
si:dkey-110g7.8 LOC108259846 coding upstream 440052 9390424 ~ 9400838 (+)
si:dkey-225f5.4 LOC108258433 coding downstream 6899 9886784 ~ 9893496 (+)
msl1a msl1 coding downstream 32883 9912768 ~ 9917101 (+)
casc3 casc3 coding downstream 38077 9917962 ~ 9926203 (+)
LOC113528352 snu13,snu13b,LOC103040872,LOC101154660,LOC105910236 coding downstream 312919 10192804 ~ 10195206 (+)
LOC113528384 slc25a17,LOC108412891,LOC106601749,LOC107666095,LOC107743042,LOC107548713 coding downstream 335160 10215045 ~ 10222874 (+)
G208472 NA non-coding upstream 92880 9746285 ~ 9748010 (+)
G208415 hoxb9,hoxb9a,LOC107662432,LOC107585091 non-coding upstream 102024 9737009 ~ 9738866 (+)
G208430 NA non-coding upstream 106843 9732608 ~ 9734047 (+)
G208403 NA non-coding upstream 285076 9555612 ~ 9555814 (+)
G208382 NA non-coding upstream 342841 9495015 ~ 9498049 (+)
G208488 col1a1a,LOC108279263,LOC107585052,LOC107740634 non-coding downstream 159524 10039409 ~ 10061965 (+)
G208700 NA non-coding downstream 341398 10221283 ~ 10221539 (+)
G208701 dxo,LOC107752708,LOC107666098,LOC107691245,LOC107743041 non-coding downstream 345698 10225583 ~ 10226503 (+)
G208783 NA non-coding downstream 462023 10341908 ~ 10342224 (+)
G208911 NA non-coding downstream 947140 10827025 ~ 10828913 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other upstream 777477 9061563 ~ 9063413 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other upstream 882790 8950466 ~ 8958100 (+)
trnas-cga_1 NA other upstream 1832479 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 1987381 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 2518925 7309207 ~ 7321965 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 64421 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 469517 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 1400195 11280080 ~ 11388020 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1687234 11567119 ~ 11577823 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 other downstream 2169522 12049407 ~ 12086058 (+)

Expression


Co-expression Network