LOC113528255


Basic Information

Item Value
gene id LOC113528255
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15471944 ~ 15472817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402916.2
CTCGCTCTGTTCACTTCAGTGGGCTTTCGAGCTGCACGCGCGTGAGCAAGAAAAATAGAAGAATCTATACGTGGGCGCCTTTTTTTCCgcaataaatgaaagaaatgattaCATCTTTGTTCACAGATTGCGTTTCTAAATCAATACTTGGAAACGCGAACCTTGTCTCAGATTATATGCCTGAAATGACATGATGCACGCGAGGACACGTGGACGGTGTATGTAGCTTGTGAACTGTAGCAAATGTTTGGATTGAAATATAAAAGGTGCTGCTGAAACCTGCATGGCACGTGCGCAGTGCATGGCTGATCTTCCGAGAGATAAGGAAAAATGTGGAGCCTAAGAGGAAGACACTGTAAAGCACACAGCCTCTGGTCTAAAGGCTGAGAATGTAGAGATCTGTCTGCAGCCTGCTTTGGATTGATCTAAATGAAGACTTCTGTTTAACAGGTTGAATGAACTTCTAGACAAAGGAAGTATTGTGGGAAAAGATGAATTTGATGCTTctacaataaaacataaattacGTGACCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402916.2 True 536 lncRNA 0.42 4 15471944 15472817

Neighbor

gene id symbol gene type direction distance location
LOC113528654 NA coding downstream 32 15471777 ~ 15471912 (-)
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding downstream 268760 15053544 ~ 15203184 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding downstream 420301 15038370 ~ 15051643 (-)
LOC113528182 LOC108274645,LOC108274429 coding downstream 499360 14955058 ~ 14972584 (-)
LOC113528557 LOC108260380 coding downstream 524410 14941903 ~ 14947534 (-)
LOC113528505 LOC108277132 coding upstream 105637 15578454 ~ 15581065 (-)
LOC113528397 stk31 coding upstream 109787 15582604 ~ 15595204 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding upstream 134627 15607444 ~ 15617384 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding upstream 752834 16225651 ~ 16227442 (-)
sox8a sox8 coding upstream 854068 16326885 ~ 16330539 (-)
G211688 NA non-coding downstream 127213 15344509 ~ 15344731 (-)
G211363 NA non-coding downstream 435049 15035169 ~ 15036895 (-)
G211349 NA non-coding downstream 470616 15000945 ~ 15001328 (-)
G211346 NA non-coding downstream 536823 14934669 ~ 14935121 (-)
G211274 NA non-coding downstream 624488 14847252 ~ 14847456 (-)
G211751 NA non-coding upstream 36880 15509697 ~ 15510283 (-)
G211773 NA non-coding upstream 74738 15547555 ~ 15547759 (-)
G211774 NA non-coding upstream 75010 15547827 ~ 15548062 (-)
G211800 rnf213 non-coding upstream 150890 15623707 ~ 15624357 (-)
G211803 NA non-coding upstream 153759 15626576 ~ 15627023 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 485832 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 781812 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 950969 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 1442303 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 1465432 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 678258 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1099728 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1288415 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 1819956 17292773 ~ 17319719 (-)
G212700 NA other upstream 1913394 17386211 ~ 17425901 (-)

Expression


Co-expression Network