LOC113528275


Basic Information

Item Value
gene id LOC113528275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 16453560 ~ 16455847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402922.2
GCgaataaacagaacaaaacgGCTAAGTAAAGTCAAGTTTATAAGTAACTTGGGGTTGGTTATAAGTACACAGACAAATCAAGGGTAAACTGGGAACAGGTGAGATTGATCATGACACGTGAGTGGAAACATCCAATAACAATATGGGCAACACAGACATAACCCTGGAAGCGCTGCCGGGTGCTTAAGCATGCTCTTTTAAATAACATTCTCCAGCTAATAGCAATAGTTTATGCTTATAttagtttagtttaatttattttgattaaatcattcattcatcatcagtacaTTGCACATTTTACAGTGTGAAACAATGCTgatttaaagttaaatatttagTGTTGAAAAGTAAAAGTTGAAAAGATTCTGTAGTTGTTTTTACACCCAGCATGATAATAAAACTCAGAGCCTGGTGTTTTATGGGTGTGTAAAGAACCAACATTCTGGCATAGAGTTGGTTAACTCTCAAGGCACAACTGAGGATCTTGACTGTGAATGAATAAGgTGGGAGAATGTCCGGTAAAAAGACCAAAGCCATTTTTGACTGCATGGTTGCTGTGCAGAGGTTTTTACCTGCAGATTATTCAGCATGCATGTCCAGCACAACAGACACCCTGTCACTTTCCTCAAGTGATCCAGATCTGACCTCTCCAGACAGAATTCCTGTGTCCAGTGGCTTACCGCAGCAACAAAGTGCTGGTATTGCAAAGGATGCATAAGAGGAGGCTAAAATGGTACTGTACATGGTTTGACACAAACGTCATGAAAAATCTAATTGCAGTGTTAATAGTATCACagttctatgtaaactctagagactgttgtgtgtgaaaatcccaatagattctgaaatactcaaacagcccatctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402922.2 True 876 lncRNA 0.38 3 16453560 16455847

Neighbor

gene id symbol gene type direction distance location
sox8a sox8 coding downstream 123021 16326885 ~ 16330539 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding downstream 226118 16225651 ~ 16227442 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding downstream 836176 15607444 ~ 15617384 (-)
LOC113528397 stk31 coding downstream 858356 15582604 ~ 15595204 (-)
LOC113528505 LOC108277132 coding downstream 872495 15578454 ~ 15581065 (-)
LOC113528411 adap1,LOC108276756,LOC106601846,LOC103363436 coding upstream 45274 16501121 ~ 16537254 (-)
LOC113527963 rnps1,LOC108411755,LOC107553655,LOC103909923,LOC107673212 coding upstream 82534 16538381 ~ 16545640 (-)
LOC113528041 LOC108276772 coding upstream 159244 16615091 ~ 16634737 (-)
LOC117595684 NA coding upstream 215298 16671145 ~ 16688599 (-)
LOC113528100 LOC108276786,LOC108438908 coding upstream 215298 16671145 ~ 16677834 (-)
G212018 NA non-coding downstream 413161 16039756 ~ 16040399 (-)
G212016 NA non-coding downstream 416243 16037116 ~ 16037317 (-)
G211935 NA non-coding downstream 484785 15892024 ~ 15968775 (-)
G212006 NA non-coding downstream 511051 15940586 ~ 15942509 (-)
G211810 rnf213 non-coding downstream 816569 15635735 ~ 15636991 (-)
G212319 NA non-coding upstream 23044 16478891 ~ 16497232 (-)
G212395 NA non-coding upstream 225337 16681184 ~ 16690337 (-)
G212463 NA non-coding upstream 376121 16831968 ~ 16832219 (-)
G212626 NA non-coding upstream 722681 17178528 ~ 17179748 (-)
G212637 NA non-coding upstream 828653 17284500 ~ 17284707 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other downstream 249569 16151075 ~ 16203991 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 1467448 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 1763428 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 1932585 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 2423919 14017615 ~ 14029641 (-)
LOC113528039 LOC108276772 other upstream 116698 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 305385 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 836926 17292773 ~ 17319719 (-)
G212700 NA other upstream 930364 17386211 ~ 17425901 (-)
LOC113528038 caskin2 other upstream 934339 17390186 ~ 17518527 (-)

Expression


Co-expression Network